1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaaacaattctttcagtaaccagcttattcaatctccatgtgtatatttgcattaggactcattgtgactatatcatgttcttatgcagCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA
species | Arabidopsis thaliana |
transcript | AT4G18710.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAG CCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAAEST: gi|124913441|gb|EH987315.1|EH987315
genomic: GGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAGgtaaacaatt ... tcttatgcagCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA
EST: TTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAG CCATTATTTCCCGGAGAAAAEST: gi|164115188|gb|ES146159.1|ES146159
genomic: TTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAGgtaaacaatt ... tcttatgcagCCATTATTTCCCGGAGAAAA
EST: TTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAG CCATTATTTCCCGGAGAAAATGCTGTGGATCEST: gi|124852165|gb|EH936602.1|EH936602
genomic: TTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAGgtaaacaatt ... tcttatgcagCCATTATTTCCCGGAGAAAATGCTGTGGATC
EST: TTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAG CCATTATTTCCCGGAGAAAATAGCTGTGGATCAGCTCGTTGAAATEST: gi|124742043|gb|EH833205.1|EH833205
genomic: TTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGCTTCTTCTTGGTCAGgtaaacaatt ... tcttatgcagCCATTATTTCCCGGAGAAAAT-GCTGTGGATCAGCTCGTTGAAAT
EST: CTTGCTGAGCTTCTTCTTGGTCAG CCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA
genomic: CTTGCTGAGCTTCTTCTTGGTCAGgtaaacaatt ... tcttatgcagCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA
tccatgtgtatatttgcattaggactcattgtgactatatcatgttcttatgcagCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA
tgttctt CT-rich tract
tgtatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaattctttcagtaaccagcttattcaatctccatgtgtatatttgcattaggactcattgtgactatatcatgttcttatgcagCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC