1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AACTGATTGAAACTCATTTGTTCTCTCTCTCTCAAATCCACTCTCTCTCTTTCTTTTCTCTTCTCCTCTCTGTGTCTCTATCGCCATGGCTGATGATAAGgtaaagctgcttgtgttccttttgctgtcttttgaagaagaagatcctgttttttggtttttccacatttgacccttcaattagttgtcttgagattcct...
species | Arabidopsis thaliana |
transcript | AT4G18710.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCGCCATGGCTGATGATAAG GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATTEST: gi|86056751|gb|DR352508.1|DR352508
genomic: ATCGCCATGGCTGATGATAAGgtaaagctgc ... tctctttcagGAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
EST: ATCGCCATGGCTGATGATAAG GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATTEST: gi|124819338|gb|EH904204.1|EH904204
genomic: ATCGCCATGGCTGATGATAAGgtaaagctgc ... tctctttcagGAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
EST: TGGCTGATGATAAG GAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
genomic: TGGCTGATGATAAGgtaaagctgc ... tctctttcagGAGATGCCTGCTGCTGTAGTTGATGGACATGATCAAGTCACTGGTCATATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTGATTGAAACTCATTTGTTCTCTCTCTCTCAAATCCACTCTCTCTCTTTCTTTTCTCTTCTCCTCTCTGTGTCTCTATCGCCATGGCTGATGATAAGgtaaagctgcttgtgttccttttgctgtcttttgaagaagaagatcctgttttttggtttttccacatttgacccttcaattagttgtcttgagattcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaagaag