Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19741603|gb|AU226956.1|AU226956EST: TCAATGATGGACTTAAGCTTGATCTTGGGCATGCTCTCACACTAGAAAAG GAGCGAGCTCACGCGTATTACAGGTGGGATGACGAAGGAACAGTTTAGAAA
genomic: TCAATGATGGACTTAAGCTTGATCTTGGGCATGCTCTCACACTAGAAAAGgttaaacatt ... gaaatcgtagGAGCGAGCTCACGCGTATTACAG-TGGGATGACGAAGGAACAGTTTAGAAA
EST:
gi|86087219|gb|DR382978.1|DR382978EST: TCAATGATGGACTTAAGCTTGATCTTGGGCATGCTCTCACACTAGAAAAG GAGCGAGCTCACGCGTATTACAGTGGGATGACGAAGGAACAGTTTAAAAAG
genomic: TCAATGATGGACTTAAGCTTGATCTTGGGCATGCTCTCACACTAGAAAAGgttaaacatt ... gaaatcgtagGAGCGAGCTCACGCGTATTACAGTGGGATGACGAAGGAACAGTTTAGAAAG
EST:
gi|124933254|gb|EL010432.1|EL010432EST: CTTGGGCATGCTCTCACACTAGAAAAG GAGCGAGCTCACGCGTATTACAGTGGGATGACGAAGGAACAGTTTAGAAAG
genomic: CTTGGGCATGCTCTCACACTAGAAAAGgttaaacatt ... gaaatcgtagGAGCGAGCTCACGCGTATTACAGTGGGATGACGAAGGAACAGTTTAGAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgttgatcaatttgtgattgtgagaaagtctaaaactgttgttgaaatcgtagGAGCGAGCTCACGCGTATTACAGTGGGATGACGAAGGAACAGTTTAGAAAGATGCAGGAGTTTATAGCCGGACGTGGATCCAAGAAACCTTCTTCTAAGT
gtctaaa putative branch site (score: 3)
atcaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttaaacattctgccatttttaacttgttgatcaatttgtgattgtgagaaagtctaaaactgttgttgaaatcgtagGAGCGAGCTCACGCGTATTACAGTGGGATGACGAAGGAACAGTTTAGAAAGATGCAGGAGTTTATAGCCGGACGTGGATCCAAGAAACCTTCTTCTAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA