1 5' 3' | 2 5' 3' |
CTATTAACGGTTTTGCCATCACCGCCGGGTTTGAACTCGCCTTGGCCTGTGATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAGgttgatttcttctcttacgacgtcgtttgcatagttatcaatagcactggtatctagcaattaggtcaaatatagttgcagattttagctttggatcata...
species | Arabidopsis thaliana |
transcript | AT4G16210.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAG GTTTGGGATATTTCCTTCATGGGGTTTGTCTCAGAAGCTGTCGAGGATCATEST: gi|86062053|gb|DR357810.1|DR357810
genomic: GATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAGgttgatttct ... gtgtttgaagGTTTGGGATATTTCCTTCATGGGGTTTGTCTCAGAAGCTGTCGAGGATCAT
EST: GATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAG GTTTGGGATATTTCCTTCATGGGGNTTGTCTCAGAAGCTGTCCGAGGATCA
genomic: GATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAGgttgatttct ... gtgtttgaagGTTTGGGATATTTCCTTCATGGGGTTTGTCTCAGAAGCTGTC-GAGGATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATTAACGGTTTTGCCATCACCGCCGGGTTTGAACTCGCCTTGGCCTGTGATATTTTGGTCGCTTCTAGAGGAGCTAAGTTCATGGATACTCACGCCAGgttgatttcttctcttacgacgtcgtttgcatagttatcaatagcactggtatctagcaattaggtcaaatatagttgcagattttagctttggatcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttctc