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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGgttaaaatgcttccttgttctgaaaattttaaaatgaaatccacaaaggaatgttttcaatttttacttaaggtagaaaatgtttggatttggaacag

Basic information

species Arabidopsis thaliana
transcript AT4G05020.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G05020.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: LOC_Os08g04630.1 (Oryza sativa), 5'ss of exon 8
TTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGgttaaaatgcttccttgttctgaaaattttaaaatgaaat--cca-caaaggaatgttttcaatt---tttacttaaggtagaa---aatgtttggatttggaacag-----
|||| ||||| ||||| ||||| || || ||||| || || || |||||| | || ||||| |||||||  |||||||||||||| || |||||||| | || |   | ||      ||    |      ||  | |  |  | | ||      ||    || ||   || |  || | | |     |||| |    |||     |      
TTGCCCCACTAGGAGGTGAGCAGACTGCTGCACAGCTCCCTGGTGATTGGATCTCCATTGGCCACAGCACACAGTGGCTCTGGTATTCTGTCTACGCAACgtaagtgttctcttccatttcagagtgacaaaggttatgttgctatcactcctgtgcccccattttggttcatctatgctggtgtctaatgctcttttttctctgaattcag

upper sequence: AT4G05020.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GRMZM2G145972_T01 (Zea mays), 5'ss of exon 5
TTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGgttaaaatgcttccttgttctgaaaattttaaaatgaaatccacaaaggaatgttttcaatttttacttaaggtagaaaatgtttggatttggaacag--------------------------
| || ||||| |||||||||||||| || ||||| ||||| || || ||| | || ||||| ||||||  ||||||||||||||||||||| ||||| | || |   |  ||||   |||  |  |    |||    |     |         | |||    | |   | |   |   |  ||  | | |  |   |                           
TCGCCCCACTAGGAGGGGAGCAAACTGCTGCACAGCTTCCCGGGGACTGGATCTCCATTGGCCACAGCTCCCAGTGGCTCTGGTACTCCGTGTACGCAACgtaagcgtctttcccccttcc-atgacaacaaagcagatcgtgctgccactcttcttccccatatttgtgatccattcatcgtcagtagtacgtctaatgatgttccctgttctctgtgttcag

upper sequence: AT4G05020.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA08G06380.1 (Glycine max), 5'ss of exon 9
TTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGgttaaaatgcttccttgttctgaaaattttaaaatga---aatccacaaagg----aatgttttcaatttttacttaaggtagaaaatgtttggat-------ttggaacag
| || || || ||||| |||||||| || ||||| ||||| || ||||||||||| ||||||||||||   || ||| | ||||| || ||||| || ||||    | | |||| | | || || ||| |||||  |   || | ||||       || |  |||  |  ||| | ||| ||  |||  |||  ||       || ||||||
TCGCTCCTCTAGGAGGAGAGCAAACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGCTCTCAATGGTTGTGGTATTCTGTCTATGCAAGgtagtca-gtttccctttgcttaatattataaaaaaatttaaactacaagactcataaggcattc--tgattaatcaagttactaaagcttttcatcaaatgctttgaacag

upper sequence: AT4G05020.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G30920.2 (Glycine max), 5'ss of exon 9
TTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGgttaaaatgcttccttgttctgaaaattttaaaatgaaatccacaaa------ggaatgttttcaatttttacttaaggtagaaaatgtttggat--ttggaacag
|||| || || ||||| |||||||| || ||||| ||||| || ||||||||||| ||||||||||||   || ||||| ||||| || ||||| || ||||    | | |||||| | || || ||| ||||| |  |   ||||       |     || | | | |  | |||    ||    |  ||  ||  || ||||||
TTGCTCCTCTAGGAGGAGAGCAAACAGCTGCACAGCTTCCTGGGGATTGGGTTTCAATTGGACACAGCTCTCAATGGCTGTGGTATTCTGTCTATGCAAGgtagtga-gtttccttttgcttaatattataaaaagttaaatacaagactcctgaggcattctgattatcaagttactaaagcttttcattaaatgctttgaacag

upper sequence: AT4G05020.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA13G32030.1 (Glycine max), 5'ss of exon 9
TTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGgttaaaatgcttccttgttctgaaaattttaaaatgaaatccacaaaggaatgttttcaatttttac---ttaaggtagaaaatgtttggat--ttggaacag
|||| ||  ||||||| ||||| || || || || ||||| |||||||||||||| ||||| || ||||| || ||||| ||||| || ||||| || ||||   | ||  | | | ||   ||  |||       | || ||||||  ||     | |||||| |    |||   |  |   | | || ||  || ||||||
TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgt---actgtgttccttttaccaattttt-------atattcacaaa--aactgcctgaattttgagacattattatttagcttctctgaatcctttgaacag

upper sequence: AT4G05020.2 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA15G07290.1 (Glycine max), 5'ss of exon 9
TTGCACCACTGGGAGGGGAGCAAACGGCAGCACAACTTCCAGGAGATTGGGTTTCTATTGGACACAGCAGCCAGTGGCTCTGGTACTCCGTCTACGCCAGgttaaaatgcttccttgttctgaaaattttaaaatga--aatccacaaaggaatgttttcaatttttacttaaggtagaaaatgtttggatttggaacag
|||| ||  ||||||| ||||| || || || || ||||| |||||||||||||| ||||| || ||||| || ||||| ||||| || ||||| || |||| |   || | | ||   |   || ||||| | | |   |          | | |||| ||  | || || || |  ||    ||     || ||||||
TTGCTCCTTTGGGAGGAGAGCAGACAGCTGCCCAGCTTCCTGGAGATTGGGTTTCAATTGGCCATAGCAGTCAATGGCTGTGGTATTCTGTCTATGCAAGgt-actgtgttccttttacc---aatttttatattcactgaattttgggacattattttaaaaatctagtttagcttcaattaattc----tttgaacag