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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaaatgcttccttgttctgaaaattttaaaatgaaatccacaaaggaatgttttcaatttttacttaaggtagaaaatgtttggatttggaacagTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTCATCTTTGGTAGAGATTCCAGTAGCATCTGATTTTCAACCTCC

Basic information

species Arabidopsis thaliana
transcript AT4G05020.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G05020.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA13G32030.1 (Glycine max), 3'ss of exon 9
gttaaaatgcttccttgttctgaaaattttaaaatgaaatccacaaaggaatgttttcaatttttac---ttaaggtagaaaatgtttggat--ttggaacagTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTCATCTTTGGTAGAGATTCCAGTAGCATCTGA---TTTTCAACCTCC
       | ||   ||  | | |  | |||    | | || ||||||  ||     | |||||| |    |||   |  |   | | || ||  || ||||||||||||||| ||||||||||| |||| | | || |||||||| ||||  || ||||| || ||||| || || || ||||||||||||      |||||    
------gtactgtgttccttttaccaattt----ttatattcacaaa--aactgcctgaattttgagacattattatttagcttctctgaatcctttgaacagTAAGCAAGTAAGCTGGCGTACAAGAGCGTTAGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCAAGTAGCATCTGAGGGAACTCAACA---

upper sequence: AT4G05020.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA15G07290.1 (Glycine max), 3'ss of exon 9
gttaaaatgcttccttgttctgaaaattttaaaatga--aatccacaaaggaatgttttcaatttttacttaaggtagaaaatgtttggatttggaacagTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTCATCTTTGGTAGAGATTCCAGTAGCATCTGATTTTCAACCTCC
  ||   || | | ||   |   || ||||| | | |   |          | | |||| ||  | || || || |  ||    ||     || |||||| |||||||| ||||||||||| |||| | | || |||||||| ||||  || ||||| || ||||| || || || ||||||||||||||    |     
-gtactgtgttccttttacc---aatttttatattcactgaattttgggacattattttaaaaatctagtttagcttcaattaattc----tttgaacagCAAGCAAGTAAGCTGGCGTACTAGAGCGTTAGTAGTTTCAGACTGGACAAGACGTTTTATTTTTGGAAGGGACTCAAGTAGCATCTGATTCCAGAGTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaggaatgttttcaatttttacttaaggtagaaaatgtttggatttggaacagTAAGCAAGTGAGCTGGCGTACGAGAGTGCTTGTGGTTTCAGATTGGATGAGGCGTTTCATCTTTGGTAGAGATTCCAGTAGCATCTGATTTTCAACCTCC
      aatgttttcaattttt  TA-rich tract