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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgatcttttaactaataatgaatactatttcgtaggaaaataatttaattgtaacaccatagtaaaagctgaattttgtgtgttattatttgatgaaagGTGGGAACTGATAGCTGGGAGGATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGGTCATGAAAAATTGAAAAGTGATCAATATATCTCTATAG

Basic information

species Arabidopsis thaliana
transcript AT4G01060.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164212664|gb|ES125569.1|ES125569
EST:     TGCATAAGCTTGTCGGTGACAG                         GTGGGAACTGATAGCTGGGAGGATCCCAGGAAGAACCGCTGGAGAAATTGA
genomic: TGCATAAGCTTGTCGGTGACAGgtttgatctt ... ttgatgaaagGTGGGAACTGATAGCTGGGAGGATCCCAGGAAGAACCGCTGGAGAAATTGA
EST: gi|19878065|gb|AU238896.1|AU238896
EST:     CAAGAAGAAGAAGATTTGGTCTCTCGAATGCATAAGCTTGTCGGTGACAG                         GTGGGAACTGATAGCTGGGAGGATCCCAGGAAGAACCGCTGGAGAAATTGA
genomic: CAAGAAGAAGAAGATTTGGTCTCTCGAATGCATAAGCTTGTCGGTGACAGgtttgatctt ... ttgatgaaagGTGGGAACTGATAGCTGGGAGGATCCCAGGAAGAACCGCTGGAGAAATTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattgtaacaccatagtaaaagctgaattttgtgtgttattatttgatgaaagGTGGGAACTGATAGCTGGGAGGATCCCAGGAAGAACCGCTGGAGAAATTGAGAGGTTTTGGGTCATGAAAAATTGAAAAGTGATCAATATATCTCTATAG
                                      ttattatttgatgaaa  TA-rich tract