1 5' 3' |
CGATAAAGTGGTGAGAAGAACGACGATGGTGGCGACTGCTGTTGCTTCCTACTTTCTCTTAACCGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCCgttagttcccccattttctcctttctgcgaatttgattatttagtttccatgaaaatctggataatgaaactcgtttctgattagtttttgacaaaattt...
species | Arabidopsis thaliana |
transcript | AT4G00530.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACTTTCTCTTAACCGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCC ATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTTEST: gi|116378011|gb|EG420603.1|EG420603
genomic: ACTTTCTCTTAACCGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCCgttagttccc ... gtatttgcagATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTT
EST: GGTCCCGAACCCAACGTTCTTGATCCC ATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTT
genomic: GGTCCCGAACCCAACGTTCTTGATCCCgttagttccc ... gtatttgcagATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGATAAAGTGGTGAGAAGAACGACGATGGTGGCGACTGCTGTTGCTTCCTACTTTCTCTTAACCGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCCgttagttcccccattttctcctttctgcgaatttgattatttagtttccatgaaaatctggataatgaaactcgtttctgattagtttttgacaaaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaaat