Sequence
atgc intronic sequence ATGC exonic sequence...gtgggttatgttacatctgttcatgttagttattgaacattgggtgcgttttctcagccatttaggtcttaatggtatttttttttgggtgtatttgcagATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTTGGACCAAAGGGAGAGCCATCTGGTAAAGAACCATCTGACACTGCTAAAT
Basic information
species | Arabidopsis thaliana |
transcript | AT4G00530.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86079038|gb|DR374795.1|DR374795EST: ACTTTCTCTTAACCGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCC ATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTT
genomic: ACTTTCTCTTAACCGGCGATTACGGTCCCGAACCCAACGTTCTTGATCCCgttagttccc ... gtatttgcagATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTT
EST:
gi|116378011|gb|EG420603.1|EG420603EST: GGTCCCGAACCCAACGTTCTTGATCCC ATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTT
genomic: GGTCCCGAACCCAACGTTCTTGATCCCgttagttccc ... gtatttgcagATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcgttttctcagccatttaggtcttaatggtatttttttttgggtgtatttgcagATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTTGGACCAAAGGGAGAGCCATCTGGTAAAGAACCATCTGACACTGCTAAAT
tcttaat putative branch site (score: 3)
ttaatggtattttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgggttatgttacatctgttcatgttagttattgaacattgggtgcgttttctcagccatttaggtcttaatggtatttttttttgggtgtatttgcagATCAAAAGGAAGATATTAGCAGCACAAGATTCTGTGAAGCAATTCATCTTTGGACCAAAGGGAGAGCCATCTGGTAAAGAACCATCTGACACTGCTAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - ctgttca
- - - - - - - - - - - - - - - - - - - - - - - - - ttctcag