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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtacgtttacaatatttgattttaagtagcaatgtttgattcgaaaagatttcgaatgctcataattgtccttaatccattttcttaccagAAAGTAAATGGCAAGAAGAAGACGGAAGCAAATGCATCTTCACCAGCAAAAGATGCTACAGATTCAAAGGTTTCATTCTCCAAGCCAACTAAGTCATCGT

Basic information

species Arabidopsis thaliana
transcript AT3G62620.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059011|gb|DR354768.1|DR354768
EST:     ATTCTATTTCCAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTTGG                         AAAGTAAATGGCAAGAAGAAGACGGAAGCAAATGCATCTTCACCAGCAAAA
genomic: ATTCTATTTCCAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTTGGgtatgtacgt ... ttcttaccagAAAGTAAATGGCAAGAAGAAGACGGAAGCAAATGCATCTTCACCAGCAAAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgattcgaaaagatttcgaatgctcataattgtccttaatccattttcttaccagAAAGTAAATGGCAAGAAGAAGACGGAAGCAAATGCATCTTCACCAGCAAAAGATGCTACAGATTCAAAGGTTTCATTCTCCAAGCCAACTAAGTCATCGT
                                 ccttaat  putative branch site (score: 4)
                                       tccattttcttacc  CT-rich tract
       aaaagattt  TA-rich tract