1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgatttttaatcgtcattgagatcttcttctgtgttcactgtatctatccttaggatagtcagcgacgtgcttcacgcagctctggttttatccaaaaaagattatattttcttagttgagctgagtttgtttgttttgccagAAAACTAAAGGCAATAAGAAAAAGAAAACGAAGAAGCAGGAGCTAGCTTCTGATTCTATTTCCAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTT
species | Arabidopsis thaliana |
transcript | AT3G62620.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAGAATGTGATTGTGAAGATGTTAACTGAGAAGCCAGTGATATCTCTG AAAACTAAAGGCAATAAGAAAAAGAAAACGAAGEST: gi|86059011|gb|DR354768.1|DR354768
genomic: ATGAGAATGTGATTGTGAAGATGTTAACTGAGAAGCCAGTGATATCTCTGgtacgatttt ... gttttgccagAAAACTAAAGGCAATAAGAAAAAGAAAACGAAG
EST: ATGAGAATGTGATTGTGAAGATGTTAACTGAGAAGCCAGTGATATCTCTG AAAACTAAAGGCAATAAGAAAAAGAAAACGAAGAAGCAGGAACTAGCTTCT
genomic: ATGAGAATGTGATTGTGAAGATGTTAACTGAGAAGCCAGTGATATCTCTGgtacgatttt ... gttttgccagAAAACTAAAGGCAATAAGAAAAAGAAAACGAAGAAGCAGGAGCTAGCTTCT
ttatccaaaaaagattatattttcttagttgagctgagtttgtttgttttgccagAAAACTAAAGGCAATAAGAAAAAGAAAACGAAGAAGCAGGAGCTAGCTTCTGATTCTATTTCCAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTT
tttgtttt CT-rich tract
aaaaaagattatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgatttttaatcgtcattgagatcttcttctgtgttcactgtatctatccttaggatagtcagcgacgtgcttcacgcagctctggttttatccaaaaaagattatattttcttagttgagctgagtttgtttgttttgccagAAAACTAAAGGCAATAAGAAAAAGAAAACGAAGAAGCAGGAGCTAGCTTCTGATTCTATTTCCAAACCAAAGTTGTTGACTGAAAAGCCAGAAGTTTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT