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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTTCGCAGGGAGATTCAGGATGAGACTGATAGAATCACAGGGAAAAACAAACAGATATCTCCAGTTCCTATTCACCTCAGTATCTACTCTCCAAATGgtatctttaataatctcagtctgattcctgtaacattcttgtttgttgatttaacattgatgtttgctcttttttatggaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G60190.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G070899_T01 (Zea mays), 5'ss of exon 4
TTGGTTCGCAGGGAGATTCAGGATGAGACTGATAGAATCACAGGGAAAAACAAACAGATATCTCCAGTTCCTATTCACCTCAGTATCTACTCTCCAAATGgtatctttaa--taatctcagtctgattcctgtaacattcttgtttgttgatttaacattgatgtt--tgctcttttttatggaaacag------------
 | || || | ||| || |||||||| ||||| ||  | || || || |  || ||||||||||||||||| ||||| ||||| || ||||||||| |||||||||      |   | ||  |||    |||     |||  |       ||  || || ||  ||  |||| ||  || | |||                
ATTGTGCGGAAGGAAATCCAGGATGAAACTGACAGGTTGACTGGAAAGACAAAGCAGATATCTCCAGTTCCAATTCATCTCAGCATATACTCTCCACATGgtatctaagccctgggcacaacctg-ccactgcttttttcaagaaaaaaaataaaaaatggagattattgcttttagttgttgaatttaaaaacctcggtt

upper sequence: AT3G60190.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv15s0021g00480.t01 (Vitis vinifera), 5'ss of exon 4
TTGGTTCGCAGGGAGATTCAGGATGAGACTGATAGAATCACAGGGAAAAACAAACAGATATCTCCAGTTCCTATTCACCTCAGTATCTACTCTCCAAATGgtatctttaataatctcagtctgattcctgtaacattcttgtttgttgatttaacattgatgtttgctc---------ttttttatggaaacag---------
 |||||||||  || ||||||||||| ||||||||||| || ||||  |  |||||||||||    ||||||||||| || ||||||||||||||||||||||| ||  ||  |   |   | ||| ||| || | |   |||      || || | | || |    ||         |    |||||||| |          
CTGGTTCGCAAAGAAATTCAGGATGAAACTGATAGAATAACTGGGAGGACAAAACAGATATCAAATGTTCCTATTCATCTTAGTATCTACTCTCCAAATGgtatgtt--attttgcaacattaatttctg-aatacttgggttgaaatgttaaataataatatggcttcacagtgaattaccatatggaaagaaaatctgact