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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGTACCGTACTCGGTGACTATGGTGGTGGAACTGGAAGTAACGCTTTCAATTCTCTCTGGGAAGCTCTTCCAACCGTCGCCGTCGTCGGTGGTCAGgtgatttctccggttgaaatatctttgacttcttcctaggttttctctctggtgactcttcaacttactttttttttgggtttgtgcag

Basic information

species Arabidopsis thaliana
transcript AT3G60190.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60190.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA03G24610.2 (Glycine max), 5'ss of exon 1
---AGCATGTACCGTACTCGGTGACTATGGTGGTGGAACTGGAAGTAACGCTTTCAATTCTCTCTGGGAAGCTCTTCCAACCGTCGCCGTCGTCGGTGGTCAGgtgat--ttctccggttgaaatatctttgacttcttcctaggttttctctctggtgactcttcaac-----ttactttttttttgggtttgtgcag------
    || || ||||| ||||| ||||| || || |   | |  |  ||||| |||  |||||| ||||||||||||||  ||||||||||||||||||| ||||| ||  ||||||| |          | ||   | ||| |  |    |    |   |||  |  ||     |||  |  | |||| |||||||  |      
GCAGGCCTGCACCGTGCTCGGCGACTACGGCGGCG---CCGACAACAACGCCTTCTCTTCTCTTTGGGAAGCTCTTCCCTCCGTCGCCGTCGTCGGTGGCCAGgtcatcattctccgttgtcttagaagtagaaagcatccaaaataaaatga--gaaaacttatacacagtttttaggtgctgtttgtgtttgtgttgttctcg

upper sequence: AT3G60190.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA07G12850.1 (Glycine max), 5'ss of exon 1
---AGCATGTACCGTACTCGGTGACTATGGTGGTGGAACTGGAAGTAACGCTTTCAATTCTCTCTGGGAAGCTCTTCCAACCGTCGCCGTCGTCGGTGGTCAGgtgat--ttctccg--gttgaaatatctttgacttcttcc-----taggttttctctctggtgactcttcaa--cttactt----tttttttgggtttgtgcag
    || || ||||| ||||| ||||| || |  |   | |  |  | ||| |||  |||||||||||||||||||||  ||||||| ||||||||||| ||||| ||  ||||| |       || |  ||||  || |        |||      |      | |      ||  ||||       ||| || ||   |||    
GCAGGCCTGCACCGTGCTCGGCGACTACGGCGCCG---CCGACAACAGCGCCTTCTCTTCTCTCTGGGAAGCTCTTCCCTCCGTCGCTGTCGTCGGTGGCCAGgtcatcattctctgtaacatgaacacgtttgttttgtcttagaagtagaaaccattcaaaataaaaggagaaagcttatccacaatttcttaggtgctgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125252408|gb|EL266493.1|EL266493
EST:     TCAATTCTCTCTGGGAAGCTCTTCCAACCGTCGCCGTCGTCGGTGGTCAG                         AGTTCTGGGAAATCTTCGGTTCTTGAGAGTATAGTTGGGAGAGATT
genomic: TCAATTCTCTCTGGGAAGCTCTTCCAACCGTCGCCGTCGTCGGTGGTCAGgtgatttctc ... gtttgtgcagAGTTCTGGGAAATCTTCGGTTCTTGAGAGTATAGTTGGGAGAGATT