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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACAAGTTAACTGGAAAGTTCTTACACACAATGCATGGATCGGAAGGAACAAAATGGATCTTTGTTATGAGTACTTTCAAGAAACTCTATGCCGGTCTGgtaagttaaaaccgttatatctttctattggtgatgaattgatattagtattgaaaaagattctaatggttcttttctttgtttatgtttacttcag

Basic information

species Arabidopsis thaliana
transcript AT3G52870.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116456469|gb|EG499061.1|EG499061
EST:     TATGCCGGTCTG                         AAAAAGAAAGGAAGGTTCCATCACTCAAGCTTTTTGGCTGGAGGAGCTACA
genomic: TATGCCGGTCTGgtaagttaaa ... tttacttcagAAAAAGAAAGGAAGGTTCCATCACTCAAGCTTTTTGGCTGGAGGAGCTACA
EST: gi|163998539|gb|ES139493.1|ES139493
EST:     CAAAATGGATCTTTGTTATGAGTACTTTCAAGAAACTCTATGCCGGTCTG                         AAAAAGAAAGGAAGG
genomic: CAAAATGGATCTTTGTTATGAGTACTTTCAAGAAACTCTATGCCGGTCTGgtaagttaaa ... tttacttcagAAAAAGAAAGGAAGG
EST: gi|124705675|gb|EH797077.1|EH797077
EST:     TTATGAGTACTTTCAAGAAACTCTATGCCGGTCTG                         AAAAAGAAAGGAAGGTTCCATCACTCAAGCTTTTTGGCTGGAGGAGCTACA
genomic: TTATGAGTACTTTCAAGAAACTCTATGCCGGTCTGgtaagttaaa ... tttacttcagAAAAAGAAAGGAAGGTTCCATCACTCAAGCTTTTTGGCTGGAGGAGCTACA
EST: gi|164187800|gb|ES015648.1|ES015648
EST:     CAAAATGGATCTTTGTTATGAGTACTTTCAAGAAACTCTATGCCGGTCTG                         AAAA-GAAAGGAAGGTTCCATC
genomic: CAAAATGGATCTTTGTTATGAGTACTTTCAAGAAACTCTATGCCGGTCTGgtaagttaaa ... tttacttcagAAAAAGAAAGGAAGGTTCCATC
EST: gi|125312172|gb|EL326257.1|EL326257
EST:     AAAAATGGATCTTTGTTATGAGTACTTTCAAGAAACTCTATGCCGGTCTG                         AAAAAGAAAGGAGGGTTCCATCACTCAAGCTTTTTGGCTGGAGGAGCTACA
genomic: -AAAATGGATCTTTGTTATGAGTACTTTCAAGAAACTCTATGCCGGTCTGgtaagttaaa ... tttacttcagAAAAAGAAAGGAAGGTTCCATCACTCAAGCTTTTTGGCTGGAGGAGCTACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCACAAGTTAACTGGAAAGTTCTTACACACAATGCATGGATCGGAAGGAACAAAATGGATCTTTGTTATGAGTACTTTCAAGAAACTCTATGCCGGTCTGgtaagttaaaaccgttatatctttctattggtgatgaattgatattagtattgaaaaagattctaatggttcttttctttgtttatgtttacttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA