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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTCAAAGCTTAAGCAGCAATGCATTAGATATCTTGGACCTgtatgtgccattttttcctctcttatgtcaatattggttttacttgtttttgggatttctctcatataagccttttctggtatcag

Basic information

species Arabidopsis thaliana
transcript AT3G52870.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124788504|gb|EH878183.1|EH878183
EST:     GCTTAAGCAGCAATGCATTAGATATCTTGGACCT                         CAAGAGAGGGAAGAGTATGAGTATGTGATCATAGAAGGGAAGATTGTTCAC
genomic: GCTTAAGCAGCAATGCATTAGATATCTTGGACCTgtatgtgcca ... ctggtatcagCAAGAGAGGGAAGAGTATGAGTATGTGATCATAGAAGGGAAGATTGTTCAC
EST: gi|125166090|gb|EL192052.1|EL192052
EST:     CAATGCATTAGATATCTTGGACCT                         CAAGAGAGGGAAGAGTATGAGTATGTGATCATAGAAGGGAAGATTGTTCAC
genomic: CAATGCATTAGATATCTTGGACCTgtatgtgcca ... ctggtatcagCAAGAGAGGGAAGAGTATGAGTATGTGATCATAGAAGGGAAGATTGTTCAC