1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATAAGTATTACCCTGATAGCAACTGGCTTCAAACGCCAAGAAGAAGGAGAAGGGAGGCCACTTCAGgtattcacttgtctcccttgacacacacacacaacatagccgattcttacatcaaatgttaaaagtcttcggttgtaatctctcttattgctacatgaaaatacag
species | Arabidopsis thaliana |
transcript | AT3G52750.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GAGAAGGGAGGCCACTTCAG GCGACACAAGCGGATGCATCAATGGGAGCCACAAGACGTCCTTEST: gi|125074448|gb|EL138385.1|EL138385
genomic: GAGAAGGGAGGCCACTTCAGgtattcactt ... gaaaatacagGCGACACAAGCGGATGCATCAATGGGAGCCACAAGACGTCCTT
EST: GCCAAGAAGAAGGAGAAGGGAGGCCACTTCAG GCGACACAAGCGGATGCATCAATGGGAGCCACAAGACGTCCTTCATCATCA
genomic: GCCAAGAAGAAGGAGAAGGGAGGCCACTTCAGgtattcactt ... gaaaatacagGCGACACAAGCGGATGCATCAATGGGAGCCACAAGACGTCCTTCATCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAGTATTACCCTGATAGCAACTGGCTTCAAACGCCAAGAAGAAGGAGAAGGGAGGCCACTTCAGgtattcacttgtctcccttgacacacacacacaacatagccgattcttacatcaaatgttaaaagtcttcggttgtaatctctcttattgctacatgaaaatacag
- - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - GGAGAA