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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttttccctctctacgctttcagaccatttcctgtcctagaaatcacttggtttcttccctagacaattcataaaagaacttcagtcccatgtcatatataacgttgtgtgtctctattttgactctcgggaaacgatttgtagGTAAATGCTGCTGCAGAAGTGATTTACGACCTCGTTGATCCAACAGCGAATCTTATATTTGGTGCTGTGGTAGATCCATCTTATAGTGGTCAA

Basic information

species Arabidopsis thaliana
transcript AT3G52750.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125286031|gb|EL300116.1|EL300116
EST:     CTGGAATAGTTTGGAACATAACCGGTGGAAGTGACTTAACACTGTTCGAG                         GTAAATGCTGCTGTAGAAGTGATTTACGA
genomic: CTGGAATAGTTTGGAACATAACCGGTGGAAGTGACTTAACACTGTTCGAGgttttttttc ... cgatttgtagGTAAATGCTGCTGCAGAAGTGATTTACGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtcatatataacgttgtgtgtctctattttgactctcgggaaacgatttgtagGTAAATGCTGCTGCAGAAGTGATTTACGACCTCGTTGATCCAACAGCGAATCTTATATTTGGTGCTGTGGTAGATCCATCTTATAGTGGTCAA
                            ttttgac  putative branch site (score: 3)
     atatataa  TA-rich tract