1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtataaactcaccaccgcccttcctttctctgttttgtttctttggatgctctgtaatttttttatgcgtatgtgtatagGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACAATGGAGGATATACTGGTACAGTTGAAGAAGGAAATGTCTACGTCGCATA
species | Arabidopsis thaliana |
transcript | AT3G52560.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTTCCATTCACGTGTCAACATGGCTTGTGTCAATCACGAAACAGGAGTG GTGGATCCTAAGAAATTTGGGCTACTTGCATACTGGCAAAGAGAGTACACAEST: gi|125280115|gb|EL294200.1|EL294200
genomic: GATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACAGGAGTGgtacgtataa ... atgtgtatagGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACA
EST: ATTCACGTGGTCAACATGGCTTGTGTCAACCACGAAACAGGAGTG GTGGATCCTAAGAAATTTGGGCTAEST: gi|124715266|gb|EH806668.1|EH806668
genomic: ATTCACGT-GTCAACATGGCTTGTGTCAACCACGAAACAGGAGTGgtacgtataa ... atgtgtatagGTGGATCCTAAGAAATTTGGGCTA
EST: GATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACAGGAGTG GTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGEST: gi|86018881|gb|DR314627.1|DR314627
genomic: GATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACAGGAGTGgtacgtataa ... atgtgtatagGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAG
EST: GATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACAGGAGTG GTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACAEST: gi|86087082|gb|DR382841.1|DR382841
genomic: GATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACAGGAGTGgtacgtataa ... atgtgtatagGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACA
EST: GGTTCCATTCACGTGTCAACATGGCTTGTGTCAATCACGAAACAGGAGTG GTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACMCA
genomic: GATTCCATTCACGTGTCAACATGGCTTGTGTCAACCACGAAACAGGAGTGgtacgtataa ... atgtgtatagGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACA
ttctctgttttgtttctttggatgctctgtaatttttttatgcgtatgtgtatagGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACAATGGAGGATATACTGGTACAGTTGAAGAAGGAAATGTCTACGTCGCATA
tctgtaatttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtataaactcaccaccgcccttcctttctctgttttgtttctttggatgctctgtaatttttttatgcgtatgtgtatagGTGGATCCTAAGAAATTTGGGCTACTTGCAAACTGGCAAAGAGAGTACACAATGGAGGATATACTGGTACAGTTGAAGAAGGAAATGTCTACGTCGCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA