1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcattgatcttatcgacatacaatctcttaagctttatttgagcagattatgccattgttgcttttgcttgtagtaacagagataaattttatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCGGAGAAACCTCCAACTGTCCGATTCCATTCACGTGTCAACATGG
species | Arabidopsis thaliana |
transcript | AT3G52560.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACATCTATATGCGTTCTTGGACTGGCACTATCATCGGTCCTCACAACGTA ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATEST: gi|86018881|gb|DR314627.1|DR314627
genomic: ACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACGTAgttatatctt ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: ACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAAC--- ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATEST: gi|86087082|gb|DR382841.1|DR382841
genomic: ACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACGTAgttatatctt ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: ACATCTATATGCGTTCTTGGACTGGCACTATCATCGGTCCTCACAACGTA ACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATEST: gi|164043829|gb|ES081846.1|ES081846
genomic: ACATCTATATGCGTTCTTGGACTGGCACCATCATCGGTCCTCACAACGTAgttatatctt ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
EST: ACTGGCACCATCATCGGTCCTCACAACGTA GCTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
genomic: ACTGGCACCATCATCGGTCCTCACAACGTAgttatatctt ... tatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGAT
gattatgccattgttgcttttgcttgtagtaacagagataaattttatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCGGAGAAACCTCCAACTGTCCGATTCCATTCACGTGTCAACATGG
tagtaac putative branch site (score: 1)
agagataaattttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcattgatcttatcgacatacaatctcttaagctttatttgagcagattatgccattgttgcttttgcttgtagtaacagagataaattttatgtcacagACTGTTCATGAAGGTAGAATCTATCAGTTGAAGCTCTTTTGTGACAAAGATTACCCGGAGAAACCTCCAACTGTCCGATTCCATTCACGTGTCAACATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA