1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttgattctgttctatgttgaatgctatgattaattcttctaaaaatctgtgaaattggttcttacactaagaaattgattcaattcgttggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTTGATGACAG
species | Arabidopsis thaliana |
transcript | AT3G51880.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGGTAACCGGTTTCTGAGATCTTCCATTCGTCTCGAATTAAG TTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGAEST: gi|86085933|gb|DR381692.1|DR381692
genomic: AGGTAACCGGTTTCTGAGATCTTCCATTCGTCTCGAATTAAGgtaacgaatt ... ggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGA
EST: GTTTCTGAGATCTTCCATTCGTATCGAATTAAG TTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGG
genomic: GTTTCTGAGATCTTCCATTCGTCTCGAATTAAGgtaacgaatt ... ggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGG
atctgtgaaattggttcttacactaagaaattgattcaattcgttggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTTGATGACAG
aaattgattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgattctgttctatgttgaatgctatgattaattcttctaaaaatctgtgaaattggttcttacactaagaaattgattcaattcgttggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTTGATGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - -ctgttct
- - - - - - - - - - - - - - - - - - - -ctaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa