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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCGGCGATCGCCAATCCTAGGTTTAACAGGTAACCGgtaataagcatctctttctcttttcctcctccttcaggcctcatctcttactctctctctgatcgtcgtctttttcttttgattctgcttttttccgctag

Basic information

species Arabidopsis thaliana
transcript AT3G51880.4
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072518|gb|DR368275.1|DR368275
EST:     AACCGGCGATCG-CAATCCTAGGTTTAACAGGTAACCG                         GTTTCTGAGATCTTCCATTCGT
genomic: AACCGGCGATCGCCAATCCTAGGTTTAACAGGTAACCGgtaataagca ... tttccgctagGTTTCTGAGATCTTCCATTCGT
EST: gi|86085933|gb|DR381692.1|DR381692
EST:     AACCGGCGATCGCCAATCCTAGGTTTAACAGGTAACCG                         GTTTCTGAGATCTTCCATTCGTATCGAATTAAG
genomic: AACCGGCGATCGCCAATCCTAGGTTTAACAGGTAACCGgtaataagca ... tttccgctagGTTTCTGAGATCTTCCATTCGTCTCGAATTAAG