1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagccctaagccttactctcatatatacaaactcgtacatagctaactctgatttccttgcaatggggaacagGAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTAAGCAAT
species | Arabidopsis thaliana |
transcript | AT3G51880.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGCATACAACAAAAACTTG GAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAATGATGAAEST: gi|164097103|gb|EL986524.1|EL986524
genomic: ATGCATACAACAAAAACTTGgtaagcccta ... tggggaacagGAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAATGATGAA
EST: AAAGGAAAGCTGAATATGAGAAGCAAATGGATGCATACAACAAAAACTTG GAGGAAGGGAGTGATGAATCTGAA
genomic: AAAGGAAAGCTGAATATGAGAAGCAAATGGATGCATACAACAAAAACTTGgtaagcccta ... tggggaacagGAGGAAGGGAGTGATGAATCTGAA
tcatatatacaaactcgtacatagctaactctgatttccttgcaatggggaacagGAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTAAGCAAT
tatacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccctaagccttactctcatatatacaaactcgtacatagctaactctgatttccttgcaatggggaacagGAGGAAGGGAGTGATGAATCTGAAAAGTCTAGATCTGAGATAAATGATGAAGATGAAGCCAGTGGGGAGGTAACAATTCCACTAAGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA