1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gttgattctgttctatgttgaatgctatgattaattcttctaaaaatctgtgaaattggttcttacactaagaaattgattcaattcgttggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTTGATGACAG
species | Arabidopsis thaliana |
transcript | AT3G51880.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTTTTTCCGCTAGGTTTCTGAGATCTTCCATTCGTCTCGAATTAAG TTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGEST: gi|152035588|gb|BP858550.2|BP858550
genomic: CTGCTTTTTTCCGCTAGGTTTCTGAGATCTTCCATTCGTCTCGAATTAAGgtaacgaatt ... ggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGG
EST: CTGCTTTTTTCCGCTAGGTTTCTGAGATCTTCCATTCGTCTCGAATTAAG TTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGG
genomic: CTGCTTTTTTCCGCTAGGTTTCTGAGATCTTCCATTCGTCTCGAATTAAGgtaacgaatt ... ggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGG
atctgtgaaattggttcttacactaagaaattgattcaattcgttggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTTGATGACAG
aaattgattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgattctgttctatgttgaatgctatgattaattcttctaaaaatctgtgaaattggttcttacactaagaaattgattcaattcgttggttgtatagTTGCTACGATGAAAACAGCAAAGGGGAAAGATAAAGTTAAGACCACAAAGGAAGCCTTGAAGCCAGTTGATGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC