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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttttcatacgaaacacattattttatcatataatatgatctctgaatcaaataacatacatctcctaattaatgtttacttcggcagTGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCGCGATACTAGCGTTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCT

Basic information

species Arabidopsis thaliana
transcript AT3G51860.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116396910|gb|EG439502.1|EG439502
EST:     GCAACTAGCTTTCTACACTGGTCCAACAG                         TGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCG
genomic: GCAACTAGCTTTCTACACTGGTCCAACAGgtaacctttt ... acttcggcagTGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCG
EST: gi|301502146|gb|HO207686.1|HO207686
EST:     GCAACTAGCTTTCTACACTGGTCCAACAG                         TGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCG
genomic: GCAACTAGCTTTCTACACTGGTCCAACAGgtaacctttt ... acttcggcagTGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCG
EST: gi|116459781|gb|EG502373.1|EG502373
EST:     GCAACTAGCTTTCTACACTGGTCCAACAG                         TGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCG
genomic: GCAACTAGCTTTCTACACTGGTCCAACAGgtaacctttt ... acttcggcagTGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgatctctgaatcaaataacatacatctcctaattaatgtttacttcggcagTGGGCGGTTTGTTGAACGCGACTTGTGGAAACGCGACAGAGCTGATAATCGCGATACTAGCGTTGGCCAATAACAAAGTGGCAGTGGTGAAATACTCTCT
                                          tttacttc  CT-rich tract
                                 taattaatgtttactt  TA-rich tract