1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcatttctgacacgtagttatccgttaccaaatattcgtcgagaaaggtaaagaaagactgctctaaaatatttttatttttgtgaaaatatgtgacagCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGAGTTAGCTTTTTGACAGA
species | Arabidopsis thaliana |
transcript | AT3G51860.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCTCGCCATCCCTCTCGCCATTCTTGCCAATTCTTACAACTACGGTCGT CCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGAEST: gi|301502146|gb|HO207686.1|HO207686
genomic: TTCTCGCCATCCCTCTCGCCATTCTTGCCAATTCTTACAACTACGGTCGTgtaagttatc ... tatgtgacagCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGA
EST: TTCTCGCCATCCCTCTCGCCATTCTTGCCAATTCTTACAACTACGGTCGT CCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGAEST: gi|116459781|gb|EG502373.1|EG502373
genomic: TTCTCGCCATCCCTCTCGCCATTCTTGCCAATTCTTACAACTACGGTCGTgtaagttatc ... tatgtgacagCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGA
EST: TTCTCGCCATCCCTCTCGCCATTCTTGCCAATTCTTACAACTACGGTCGT CCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGA
genomic: TTCTCGCCATCCCTCTCGCCATTCTTGCCAATTCTTACAACTACGGTCGTgtaagttatc ... tatgtgacagCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGA
aaggtaaagaaagactgctctaaaatatttttatttttgtgaaaatatgtgacagCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGAGTTAGCTTTTTGACAGA
ctctaaa putative branch site (score: 3)
tctaaaatatttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatttctgacacgtagttatccgttaccaaatattcgtcgagaaaggtaaagaaagactgctctaaaatatttttatttttgtgaaaatatgtgacagCCGTTGATATTTGGACTGAGCTTGATAGGGCTGACACCTCTAGCTGAGCGAGTTAGCTTTTTGACAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - -ctgacac
- - - - - - - - - - - - - taccaaa
- - - - - - - - - - - - - - - - - - - - cgagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctaaa