Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacctctcatctctgcaccatgcctcagtactttcttccaaatttctataaaatattcttggtttgttaatgaattttgtctctcag

Basic information

species Arabidopsis thaliana
transcript AT3G51270.2
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 5'ss of exon 8
ATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacctctcatctctgcaccatgcctcagtactttcttccaaatttctataaaatattcttggtttgttaatgaattttgtctctcag
||||||||||| |||||| | || |||||||| || || || ||||||||||||  ||| || ||||| || ||||||||||| |   ||    | |         |  |||  |||   | |   |||  |  | | ||  |||   |                  
ATTGATGATGATGAGAAAGTTACAATGATTGACTTCCCGCAGATGGTATCTGTTAAACATCGGAATGCCCAGATgtatgtgacat---attctagtagttaagagaaagactacctttgtattcattattcatgagttttacttttgcag-----------------

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G472991_T02 (Zea mays), 5'ss of exon 10
ATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacct-ctcatctctgcaccatgcctcagtactttcttccaaatttctataaaatattcttggtttgttaatgaattttgtctctcag
||||||||||| || ||||| ||| | |||||||||||||| |||||||||||||| || || ||||| |||||||||||  | | ||||  ||        | |   ||  | | ||  |||      |||   ||| ||  ||||                     
ATTGATGATGATGAAAAAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAATgtatgtagcttactcagatcacttatgcgacattgtcttattttttaaa-----gtaacggatttttcttttgcag------------------

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GRMZM2G472991_T04 (Zea mays), 5'ss of exon 10
ATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacct-ctcatctctgcaccatgcctcagtactttcttccaaatttctataaaatattcttggtttgttaatgaattttgtctctcag
                |||| ||| | |||||||||||||| |||||||||||||| || || ||||| |||||||||||  | | ||||  ||        | |   ||  | | ||  |||      |||   ||| ||  ||||                     
----------------AAATTACGGTTATTGATTTTCCACAGATGGTATCTGTTTCTCATCGTAATGCCCAAATgtatgtagcttactcagatcacttatgcgacattgtcttattttttaaa-----gtaacggatttttcttttgcag------------------

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 8
ATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacctctcatc-tctg-caccatgcctcagtactttcttccaaatttctataaaatattcttg----gtttgttaatgaattttgtctctcag-
||||||||||| || ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| | | |  ||| |  | ||  |   |  ||||  | ||||||   | ||  ||| | |  | || |    | |||| | |   |  ||| |    | 
ATTGATGATGATGAAAAAATTACAATGATTGATTTTCCACAAATGGTATCTGTGTCACACCGTAATGCGCAGATgtaagagtctcctccttgtatgataatctttctcataattttcttttgacttgttatcacaattcctagccatgcttgtcacttcgtcatgttttgttgt

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 8
ATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacctctcatc-tctg-caccatgcctcagtactttcttccaaatttctataaaatattcttggtttgttaatgaattttgtctctcag------
 || ||||||| || ||||| || ||||||||||||||||||||||||||||| |||||||| ||||| || ||||| |   |  ||| |  | ||  |   |  ||||  | ||||||   | ||  ||| |    | || |    |    | | ||| |    |||       
-TTAATGATGATGAAAAAATTACAATGATTGATTTTCCACAAATGGTATCTGTGTCACACCGTAATGCGCAGATGtaagattctcctccttgtatgatagtctttctcataattttcttttgacttgttatcacgattcctagccaagcctgtcactttggcacttcactttgtt

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 9
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 8
ATTGATGATGAAGAGAAAATAACGATGATTGATTTTCCACAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacctctcatctctgcaccatgcctcagtactttcttccaaatttctataaa-atattcttggtttgttaatgaattttgtctctcag-----------------------------------------------------------
|| |||||||| |||||  |||| ||||||||||| || |||||||||||||| || || || |||||||| |||||||  ||    | | |    |   | | |      ||| | | |     || |    |  |  ||| ||| || ||  | | ||   ||                                                              
ATAGATGATGATGAGAAGGTAACCATGATTGATTTCCCTCAAATGGTATCTGTGTCTCATCGTAATGCACAGATgtatgaaacactacctattctgattttccatataatttttgtcctactcaactgtttttaggtcattgatttttttatccaatctgctacttttgacatctgtttgcttgtttcaaatattatattttaatcttatgacattctgattttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164016050|gb|EL985748.1|EL985748
EST:     CAAATGGTATCTGTTTCACACCGAAATGCACAAAT                         GTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTT-CAGAAAA-G
genomic: CAAATGGTATCTGTTTCACACCGAAATGCACAAATgtatgtgacc ... tgtctctcagGTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGAAAAAG