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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGAACCCTGAGACAATTTTCGAGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCAATGAATTCAACATCATGgtgagatacttagatctatctagttgaattataccttctatttgtaagttactttgctgaaaatatcatgcatttatttgaagctgccttctcatataagttaattaatacttctgtaagcatgctagttttgtcctctgcctacttacaattttcattgacacatcctgtttatgtatgcatgtatgttatag

Basic information

species Arabidopsis thaliana
transcript AT3G51270.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: LOC_Os01g66520.1 (Oryza sativa), 5'ss of exon 7
ACAGAACCCTGAGACAATTTTCGAGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCAATGAATTCAACATCATGgtga-gatacttagatctatc-tagttgaattataccttctatttgtaagttactttgctgaaaat--atcatgcatttatttgaagctgccttctcatataagttaattaatacttctg--taagcatgctagttttgtcctctgcctacttacaattttcattgacacatcctgtttatgtatgcatgtatgttatag
||| || || ||     |||| || |  ||  ||||  |||||||||||||||| |||||||| || || |||||||| || || || ||||| ||||||||   | | |||  | || |  ||  |  |  |||   |  | |  |  ||| | | ||  | | |  | || |  |  |  |  | |     |   |  |   |  ||||| |||||||  |||     | |  ||| | || ||  |   |  |  |||    |                                  
ACAAAATCCAGACGATGTTTTTGACACAATTCTTGGCCTTGTTGTTCGTTTGGCGGAGCATGGGCTGATACATTGTGATTTTAACGAGTTCAATATCATGgtattgcttcttgtaccttttataagttcac-atagaattcactctttggttgcct-gcaaacagtcaaacaggtgtcaaggtagaacaatggttgtagttttctagattaa-acttctgaataatgtcaccatattttttctttgtgtgtattgatgttttgcag----------------------------------

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G472991_T01 (Zea mays), 5'ss of exon 9
ACAGAACCCTGAGACAATTTTCGAGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCAATGAATTCAACATCATGgtgaga--tacttagatctatctagttgaattataccttctatttgtaagttactttgctgaaaatatcatgcatttatttgaagctgccttctcatataagttaattaatacttctgtaagcatgctagttttgtcctctgcctacttacaattttcattgacacatcctgtttatgtatgcatgtatgttatag
||| || || ||     |||| || |  ||  ||||| || ||||||||||||| |||||||| || || ||||||||||| ||||| ||||| ||||||||      | |||     | ||| |||    |  |  || ||  | | |  | | ||| |  || |   |   || |   | ||| | |  |   | |  |                                                                                               
ACAAAATCCAGATGACGTTTTTGACACAATTCTTGGTCTTATTGTTCGTTTGGCAGAGCATGGACTGATACATTGTGACTTTAATGAGTTCAATATCATGgtatctcttccttttccttttcttgtttgtcttgattttataagttttaaat-ccttggtataagtgaaaattatctggat-aagatactatggaacaagac----------------------------------------------------------------------------------------------

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GRMZM2G038309_T01 (Zea mays), 5'ss of exon 8
ACAGAACCCTGAGACAATTTTCGAGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCAATGAATTCAACATCATGgtgagatacttagatctatctagttgaattataccttctatttgtaagttactttgctgaaaatatcatgcatttatttgaagctgccttctcatataagttaat-taatacttctgtaagcatgctagttttgtcctctgcctacttacaattttcattgacacatcctgtttatgtatgcatgtatgttatag
||| || || ||     |||| ||    ||  ||||| || | |||||||||||||||||||| || || || |||||||| ||||| ||||| ||||||||           | || | |  ||    | | |||| | | ||| | ||  | || |  |||   | | | | ||  | ||  |   |      ||||| || | |   || | |                                                                               
ACAAAATCCGGATGATGTTTTTGACTCAATTCTTGGTCTTATCGTTCGTTTGGCTGAGCATGGACTCATACACTGTGACTTTAATGAGTTCAATATCATGgt-----------accttttttctttttcttttccttgtttgtgttaatttatatgttttaaac--ccttcgtataagtaaaatt---tatctggataagatactatggaacatgt-------------------------------------------------------------------------------

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA18G04910.1 (Glycine max), 5'ss of exon 7
ACAGAACCCTGAGACAATTTTCGAGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCAATGAATTCAACATCATGgtgagatacttagatctatctagttgaattataccttctatttgtaagttactttgctgaaaatatcatgcatttatttgaagctgccttctcatataagttaattaatacttctgtaagcatgctagttttgtcctctgcctacttacaattttcattgacacatcctgtttatgtatgcatgtatgttatag
 | ||| || |||||| |||| |||   ||  |||||   || ||||| ||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||   || |||  |  |  |    | ||| ||       |||   |  ||  |||  |||||   |||   |||   |||    |  |||||  | ||   |  | ||| ||  |    | |                                                                        
-CTGAATCCAGAGACAGTTTTTGAGGCAATTCTTGGTCAGGTCGTTCGGTTGGCAGAGCATGGTCTCATTCATTGTGATTTCAATGAATTTAACATCATGGt---atgctttaacatgccagcataaatgattaaaggaattctaatttttatttcatgaaa---tcagttattgtgttggcttttgcttctagtttacactc-tgaattctattcattgtaga----------------------------------------------------------------------

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: GLYMA11G33320.1 (Glycine max), 5'ss of exon 7
ACAGAACCCTGAGACAATTTTCGAGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCAATGAATTCAACATCATGgtgagatacttagatctatctagttgaattataccttctatttgtaagttactttgctgaaaata-tcatgcatttatttgaagctgccttctcatataagttaattaatacttctgtaagcatgctagttttgtcctctgcctacttacaattttcattgacacatcctgtttatgtatgcatgtatgttatag
|||||| || |||||| |||| |||   ||  |||||   |||||||| ||||| || |||||||| ||||||||||| ||||||||||| |||||||||||   || |||  |  |  | ||   ||| ||       |||   || ||| |||  |||||  | | || |  ||   |   ||| |    ||| | |    | |  || | | ||||                                                                            
ACAGAATCCAGAGACAGTTTTTGAGGCAATTCTTGGTCAGGTTGTTCGGTTGGCAGAACATGGTCTCATTCATTGTGATTTCAATGAATTTAACATCATGgt---atgctttaacatgcc-agcataatgattaaaggaattctaaatttaatttcatgaaatcagttattctgttggcttttgcttctggttcacacactgaattccattcat-tgtag---------------------------------------------------------------------------

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 5'ss of exon 7
ACAGAACCCTGAGACAATTTTCGAGAAGATCATTGGTATTGTTGTTCGTTTGGCTGAGCATGGTCTAATTCATTGTGACTTCAATGAATTCAACATCATGgtgagatacttagatctatctagttgaattataccttctatttgtaagttactttgctgaaaatatcatgcatttatttgaagctgccttctcatataagttaattaatacttctgtaagcatgctagttttgtcctctgcctacttacaattttcattgacacatcctgtttatgtatgcatgtatgttatag
 || || ||||| | | |||| || |  || |||||| ||||||||| | |||| || ||||| || ||||||||||||||||||||||||||||| |||||  |    | |    |     ||||    || |||    |||||  |  | ||| |||      |||| || | ||||     ||||||       ||| |||   |  |||                                                                                 
GCAAAATCCTGACATAGTTTTTGAAACAATTATTGGTCTTGTTGTTCATCTGGCAGAACATGGCCTTATTCATTGTGACTTCAATGAATTCAACATTATGgtatgcatttcaag--tgctgtgttg--ccatgcctcaagtttgttggc-atttttctg------tcatacagtgatttt---ttgcctttgttggaaagctaagagagtcttt--------------------------------------------------------------------------------