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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTTATGTGACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGgtttgttctatataccattggcttgatttgtcaaatttggatccttaataagctactctagtaatcttttatggtcaatgtcttcagctaagcagtcatataaaaaccaaatgttctagttagtccaattaaccaatttgatgcaagtagatcatcacaatcatatggacttttgtcatttcggttttctttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G48540.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G124091_T04 (Zea mays), 5'ss of exon 7
AAGCTTTATGTGACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGgtttgt-tctatataccattggcttgatttgtcaaatttggatccttaataagctactctagtaatctttta---tggtcaatgtcttcagctaagcagtcatataaaaaccaaatgttctagttagtccaattaaccaatttgatgcaagtagatcatcacaatcatatggacttttgtcatttcggttttctttcttgcag
||  | ||||| || |||||||| |||||||||||||||||||||||| | ||||||||| ||| | ||  ||     || |   |    ||    |      ||    | |  | |   |    |   ||  | || | | ||   |    ||                                                                                                       
AAATTGTATGTCACCATGTTCCCATGCAATGAATGTGCCAAGATTATTATTCAGgtttgtctctttgtaggatcatggtgttagttagggttacagtttacggtagtgcatttaaatttacccccacaatgacctatatttccactcattttgt-------------------------------------------------------------------------------------------------------

upper sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv17s0000g01370.t01 (Vitis vinifera), 5'ss of exon 7
AAGCTTTATGTGACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGgtttgttctatataccattggcttgatttgtcaaatttggatccttaataagctactctagtaatcttttatggtcaatgtcttcagctaagcagtcatataaaaaccaaatgttctagttagtccaattaaccaatttgatgcaagtagatcatcacaatcatatggacttttgtcatttcggttttctttcttgcag
| |||||||||||| ||||| |||||||| |||||||||||||| ||  | ||||||       | |    |  |    || ||  | | |  |||  |   | |     |  |||||       | |  |||| | |   |     |||   || ||| ||                                                                                           
AGGCTTTATGTGACCATGTTTCCTTGCAACGAATGTGCCAAGATAATCATTCAGgttatccaactgtcttctctgtagtatatgcgacagtatgattatctttga-----tgcagtaactgccctttggaaatgccatatacctcatagt---atcaaaccc-------------------------------------------------------------------------------------------

upper sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S426_43V6.1 (Physcomitrella patens), 5'ss of exon 8
AAGCTTTATGTGACAATGTTCCCTTGCAATGAATGTGCCAAGATTATTTTACAGgtttgttctatataccattggcttgatttgtcaaatttggatcc-ttaataagctact--ctagtaatcttttatggtcaatgtcttcagctaagcagtcatataaaaaccaaatgttctagttagtccaattaaccaatttgatgcaagtagatcatcacaatcatatggacttttgtcatttcggttttctttcttgcag
|  || || |||||  | |||||||||||||||||||||||||| ||| | |||||  |   |||       ||| |  |  |  ||      || |  ||     | | ||  | |  ||| || | |  |     | ||      | | ||||||                                                                                                   
AGACTGTACGTGACCCTCTTCCCTTGCAATGAATGTGCCAAGATAATTATTCAGgtaagca-tatccggtcatggatcaaaataccagtggaagaacaattttctgggtgctggccaacaattttctttttttggattatttga--gatcggtcata---------------------------------------------------------------------------------------------------