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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCGCATGTTTGGTGAGCCAAAATGGTGTAATCCTTGgtaagataatacgatcacacttgtgttttgatctctttgaacaacatgaagtgtggttgtatagtttatttcattttgtcacttagctggtacatgcgagacacatataaacgaggactcaaaaactttcatctttcatttag

Basic information

species Arabidopsis thaliana
transcript AT3G48540.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G03380.1 (Glycine max), 5'ss of exon 3
GTTGGCGCATGTTTGGTGAGCCAAAATGGTGTAATCCTTGgtaagataat-acgatcacacttgtgttttgatctctttgaacaacatgaagtgtggttgtatagtttatttcattttgtcacttagctggtacatgcgagacacatataaacgaggactcaaaaactttcatctttcatttag
||||| || ||||||||||| ||| |||||||||| ||||||||| | || | | || ||  |     ||  || || |        |        |      || || | | | ||||    ||     ||                                                    
GTTGGGGCTTGTTTGGTGAGTCAAGATGGTGTAATTCTTGgtaagttcattaggttctcatatcccaattattcactcttttttttttctctctctgaaacgcaggtt-tcttactttgctttttcttctgtcag-------------------------------------------------

upper sequence: AT3G48540.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G13950.1 (Glycine max), 5'ss of exon 2
GTTGGCGCATGTTTGGTGAGCCAAAATGGTGTAATCCTTGgtaagataatacgatcacacttgtgttttgatctctttgaacaac-atgaagtgtggttgtatagtttatttcattttgtcacttagctggtacatgcgagacacatataaacgaggactcaaaaactttcatctttcatttag
||||| || ||||||||||| ||| |||||||||| ||||||||| | ||   || |  | | |   ||  || ||||      |  ||||  |  | | | |   ||   |  || |  |  | ||                                                         
GTTGGGGCTTGTTTGGTGAGTCAAGATGGTGTAATTCTTGgtaagttcattaaattat-catatccattattcactttatttttctgtgaaaagcagatttgttactttgctttttcttccg-tcag---------------------------------------------------------