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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATGTTTTGGGACAACCAAGTATTGCCATGCATGGTTGAGAAACGTGgtatgccctatatgcactcttgttctgctctctggcccccagaaattttctttcagctttcctcttttcagttgaaatttgctactgatattattggaatatggattgtttgttctattcccag

Basic information

species Arabidopsis thaliana
transcript AT3G45630.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45630.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GRMZM2G400238_T01 (Zea mays), 5'ss of exon 6
GGCATGTTTTGGGACAACCAAGTATTGCCATGCATGGTTGAGAAACGTGgtatgccctatatgcactcttgttctgctctctggcccccagaaattttcttt-cagctttcctcttttcagttgaaatttgctactgatattattggaatatggattgtttgttctattcccag
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GGCATGTTTTGGTACTACGAAGTATTGCCATGCATGGCTGCGAAACATGgtaca----------attgttgcttcgttctcatagcttcatttacttactctactacccagttcacttatcctgaatatttct--tgacttttcccag--------------------------