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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcatctcgagtaccctgttgtttaaaactgattactcagtctgttcattgacttcaatttttttttcttttatatctgcagGGCATGTTTTGGGACAACCAAGTATTGCCATGCATGGTTGAGAAACGTG

Basic information

species Arabidopsis thaliana
transcript AT3G45630.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G45630.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G400238_T02 (Zea mays), 3'ss of exon 5
gtaagtcatctcgagtaccctgttgtttaaaactgattactcagtctgttcattgacttcaatttttttttcttttatatctgcagGGCATGTTTTGGGACAACCAAGTATTGCCATGCATGGTTGAGAAACGTG
    || |  |    |||  |||| | |        ||   ||  |     | | |||  |||  || ||   | |     ||||||||||||||||| || || |||||||||||||||||| || ||||| ||
----gtgagtttctatactttgttctcttctttaagttttaca--caacatagtaactcaaatggttgttgactgt-----tgcagGGCATGTTTTGGTACTACGAAGTATTGCCATGCATGGCTGCGAAACATG

upper sequence: AT3G45630.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GRMZM2G146267_T02 (Zea mays), 3'ss of exon 6
---gtaagtcatct-cgagtaccctgttgtttaaaactgattactcagtctgttca--ttgacttcaatttttttttc------ttttatat--ctgcagGGCATGTTTTGGGACAACCAAGTATTGCCATGCATGGTTGAGAAACGTG
         | ||  |||| ||  | ||||    |||   ||  ||  |   || |  || ||   |  |  |   ||      || |  |    |||||||||||||| || || || |||||||||||||||||| || ||||| ||
aggccggaccgtccgcgaggacgtttttgtgctcaacactttgttctcttctttaaattttacacaacatagtaactcaaatggttgtggactgttgcagGGCATGTTTCGGTACTACGAAGTATTGCCATGCATGGCTGCGAAACATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgattactcagtctgttcattgacttcaatttttttttcttttatatctgcagGGCATGTTTTGGGACAACCAAGTATTGCCATGCATGGTTGAGAAACGTG
                   cattgac  putative branch site (score: 3)
                         cttcaatttttttttc  CT-rich tract
                    attgacttcaattttt  TA-rich tract