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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagtcctcaagctttttgattatgtggtttcaagttcttgtcttcttgtttcaatttcaaagtaaatgttttcatcggatttgcagACGAGATCAGCTGATGAAGGACAGACAACATATTACACTTGCCCCAATTGTGCTCATAGATTCACAGAAGGTTGATGTTTCCATCATTGTGATTCAGATA

Basic information

species Arabidopsis thaliana
transcript AT3G25940.1
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079026|gb|DR374783.1|DR374783
EST:     AGGCGTGCGAGAAATGCCAGCACCCCGAGCTTGTATACACAACCAGACAG                         ACGAGATCAGCTGATGAAGGACAGACAACATATTACACTTGCCCCAATTGT
genomic: AGGCATGCGAGAAATGCCAGCATCCTGAGCTTGTATACACAACCAGACAGgtatagtcct ... ggatttgcagACGAGATCAGCTGATGAAGGACAGACAACATATTACACTTGCCCCAATTGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttcttgtcttcttgtttcaatttcaaagtaaatgttttcatcggatttgcagACGAGATCAGCTGATGAAGGACAGACAACATATTACACTTGCCCCAATTGTGCTCATAGATTCACAGAAGGTTGATGTTTCCATCATTGTGATTCAGATA
                     aatttcaaagtaaat  TA-rich tract