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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGAGTTCTTGTTCTGTAATTTGTGTGGGACTATGCTTGTCTTGAAATCAACCAAGTATGCAGAATGTCCACATTGCAAAACAACACGGAATGCAAAAGgttttgatgaatctttcttgatatcatcaaatcaaaacaaagtttttgtttcttggttggtttaatcttattgctgtgcttttatcgttcag

Basic information

species Arabidopsis thaliana
transcript AT3G25940.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25940.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA03G33630.1 (Glycine max), 5'ss of exon 1
AGCGAGTTCTTGTTCTGTAATTTGTGTGGGACTATGCTTGTCTTGAAATCAACCAAGTATGCAGAATGTCCACATTGCAAAACAACACGGAATGCAAAAGgttttgatgaatctttcttgatatcatcaaatcaaaacaaagtttttgtttcttggttggt---ttaatcttattgctg-tgcttttatcgttcag----------------------------------------------------------------------------
  ||| |||||||||||||||||||||||||| |||||     |    || ||  |||| ||| |||| ||||  ||||||||    ||  |   | |||||    |       |||||  |||  |||||| |   |  |   ||  ||| ||  ||| |   || || | ||   |  || | ||  | || |                                                                             
CTCGATTTCTTGTTCTGTAATTTGTGTGGGACAATGCTCACTGTCCCTTCCACTGAGTACGCACAATGCCCACTGTGCAAAACTCGCCGAGACATACAAGgtc---aaaccctcttcttattattttcaaattatttcgcatgcttgtttttttcattgataacttgatttcatatttactgatatttacttttatattatgtatgggtacataaatataacattcttcttttgatgttttatgtgttgtaacggaatatctttgtcttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079026|gb|DR374783.1|DR374783
EST:     AACCAAGTATGCAGAATGTCCACATTGCAAAACAACACGGAATGCAAAAG                         ATATCATCGACAAGGAAATAGCTTACACAGTTTCTGCTGAG
genomic: AACCAAGTATGCAGAATGTCCACATTGCAAAACAACACGGAATGCAAAAGgttttgatga ... tatcgttcagATATCATCGACAAGGAAATAGCTTACACAGTTTCTGCTGAG