1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCTGCTGACTCCTCCTCTTCGCTTCAAACCTTTCAGACTGAAGTAACAGAAGATAGTTTTGGCAAATTTATTCTGACGTGCAATATTGCAAGAATTCGAGgtaaaaagctcattttattcttcttattatactccctttgtttcaaaatataagaacaaatataagttgagatatggtcacaaatgataaaatgcatttaactttgcatggaaacttgcaaaacatgttataatatgaaacaacgtagtaatcatctcaacttattcaatctctctgtacag
species | Arabidopsis thaliana |
transcript | AT3G25080.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AGATAGTTTTGGCAAATTTATTCTGACGTGCAATATTGCAAGAATTCGAG GGGAACCAAGCAATGTCTEST: gi|164201533|gb|EL975439.1|EL975439
genomic: AGATAGTTTTGGCAAATTTATTCTGACGTGCAATATTGCAAGAATTCGAGgtaaaaagct ... ctctgtacagGGGAACCAAGCAATGTCT
EST: ATATTGCAAGAATTCGAG GGGAACCAAGCAATGTCTATACCGGGTTGAATATAGGTTATCGCTTGCCG
genomic: ATATTGCAAGAATTCGAGgtaaaaagct ... ctctgtacagGGGAACCAAGCAATGTCTATACCGGGTTGAATATAGGTTGTCGCTTGCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCTGACTCCTCCTCTTCGCTTCAAACCTTTCAGACTGAAGTAACAGAAGATAGTTTTGGCAAATTTATTCTGACGTGCAATATTGCAAGAATTCGAGgtaaaaagctcattttattcttcttattatactccctttgtttcaaaatataagaacaaatataagttgagatatggtcacaaatgataaaatgcatttaactttgcatggaaacttgcaaaacatgttataatatgaaacaacgtagtaatcatctcaacttattcaatctctctgtacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA