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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagctcattttattcttcttattatactccctttgtttcaaaatataagaacaaatataagttgagatatggtcacaaatgataaaatgcatttaactttgcatggaaacttgcaaaacatgttataatatgaaacaacgtagtaatcatctcaacttattcaatctctctgtacagGGGAACCAAGCAATGTCTATACCGGGTTGAATATAGGTTGTCGCTTGCCGGAGTGTCCGCCAGAGAATCCTTTTGAAATATATTATCTG

Basic information

species Arabidopsis thaliana
transcript AT3G25080.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116405332|gb|EG447924.1|EG447924
EST:     AGATAGTTTTGGCAAATTTATTCTGACGTGCAATATTGCAAGAATTCGAG                         GGGAACCAAGCAATGTCT
genomic: AGATAGTTTTGGCAAATTTATTCTGACGTGCAATATTGCAAGAATTCGAGgtaaaaagct ... ctctgtacagGGGAACCAAGCAATGTCT
EST: gi|164201533|gb|EL975439.1|EL975439
EST:     ATATTGCAAGAATTCGAG                         GGGAACCAAGCAATGTCTATACCGGGTTGAATATAGGTTATCGCTTGCCG
genomic: ATATTGCAAGAATTCGAGgtaaaaagct ... ctctgtacagGGGAACCAAGCAATGTCTATACCGGGTTGAATATAGGTTGTCGCTTGCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttataatatgaaacaacgtagtaatcatctcaacttattcaatctctctgtacagGGGAACCAAGCAATGTCTATACCGGGTTGAATATAGGTTGTCGCTTGCCGGAGTGTCCGCCAGAGAATCCTTTTGAAATATATTATCTG
                                          tctctctgt  CT-rich tract
                                  ttattcaat  TA-rich tract