Sequence
atgc intronic sequence ATGC exonic sequenceGCTGCAATGGCTGCTGCGCAGGCTATTGTTGCTGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAACAAGGGATCTTTAGgtactgtaccttttgttgctagtctctcgatattcatctctattttttctttgggtctcaagttgaatatcattagatatttatttagttttctcgatactcatgagttctactagcttttggtttag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G23900.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G23900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA08G11590.1 (Glycine max), 5'ss of exon 2
------GCTGCAATGGCTGCTGCGCAGGCTATTGTTGCTGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAA--CAAGGGATCTTTAGgtactgtaccttttgttgctagtctctcgatattcatctctattt-----tttctttgggtctcaagttgaatatcattagatatttatttagttt--tctcgatactcat----------gagttctactagcttttggtttag-----------------------------
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TCTGCTGCTGCAATGGCTGCAGCTCAGGCAATAGTTGCTGCTCAAGCCCTTCAAGCACATGCAGCTCAGGTGCAAGCTCAGTCTGCAAAAGATTCCACTGgtatgctgtta-tgttaattttgtttttgttttagtggtacat-tttttatttcacaattctaatatgatgaaagctctctctccttaattttgcactatgtttgattgtgatattcttttttgttgctgtgttgtactgtttcctggttttttcttctaattgtatttgctaccacaatag
upper sequence: AT3G23900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: GLYMA05G28570.2 (Glycine max), 5'ss of exon 2
------GCTGCAATGGCTGCTGCGCAGGCTATTGTTGCTGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAACAAGGGATCTTTAGgtactgtaccttttgttgctagtctctcgatattcatctctattttttctttgggtctcaagttg-aatatcattagatatttatttagttttctcgatactcatgagttctactagcttttggtttag
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TCTGCAGCTGCAATGGCTGCCGCTCAGGCAATAGTTGCTGCTCAAGCCCTTCAAGCACATGCAGCTCAGGTGCAAGC------TCAGTCTGCGAAAGATTCCGCTGgtatgctg--ttatcttaattttgttttagtggt-acgtttatcatttcac-aattctaaatttctaatatgatgagagctctctctccttaattttgcactaa-------------------------
upper sequence: AT3G23900.1 (Arabidopsis thaliana), 5'ss of exon 2
lower sequence: Vv04s0159g00020.t01 (Vitis vinifera), 5'ss of exon 2
GCTGCAATGGCTGCTGCGCAGGCTATTGTTGCTGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAACAAGGGATCTTTAGgtactgtaccttttgttgctagtctctcgatattcatctctat--tttttctttgggtctcaagttgaatatcattagatattta--tttagttttctcgatactc---atgagttctactagcttttggt-ttag
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GCTGCAATGGCTGCTGCTCAGGCAATTGTTGCTGCCCAAGCCCTTCAAGCTCATGCTGCTCAGGTTCAAGCACAAGCCCAGTCAGCCAAAGACTCAGCTGgtaccccttctcttgttgc-agtgtgtaatttttttattcaatggtttattcttggaaagca-gttttattttgtttcatttttaaattccactttaactgtttcctgtatgattccgtgttgctcttcttatcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164047875|gb|ES195929.1|ES195929EST: CAAACAAGGGATCTTTAG GTTCCCCAG-AAAAGGAGAAAACGGGGATTTGAAGAAATTTCTCCAAGTTA
genomic: CAAACAAGGGATCTTTAGgtactgtacc ... tttggtttagGTTCCCCAGAAAAAGGAGAAAACGGGGATTTGAAGAAATTTCTCCAAGTTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGCAATGGCTGCTGCGCAGGCTATTGTTGCTGCACAGGCTCTTCAAGCTCATGCTTCTCAGATGCAAGCACAGGCTCAATCAAACAAGGGATCTTTAGgtactgtaccttttgttgctagtctctcgatattcatctctattttttctttgggtctcaagttgaatatcattagatatttatttagttttctcgatactcatgagttctactagcttttggtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG