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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaatcttatcgtttccattgatgtttcgtttatgtatataggctttgtttgatggtaaaggtgttgtctttatggaattttgtaacagGGTCTTCTTCTACTGGACTGATGGGTTCTGCTCCAGCTTCATACTCGAATCTTATAAATCAAACAATGCCAAACATGCCTAATTACACTGGTTCTGTTTC

Basic information

species Arabidopsis thaliana
transcript AT3G23900.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164001624|gb|EL999941.1|EL999941
EST:     CAATGGGAATGCTATCATGGGAAGTCCCTTTCCTGTCTTCTTTAGCCAAG                         GGTCTTCTTCTACTGGACTGATGGGTTCTGCTCCAGCTTCATA
genomic: CAATGGGAATGCTATCATGGGAAGTCCCTTTCCTGTCTTCTTTAGCCAAGgtaatgaatc ... tttgtaacagGGTCTTCTTCTACTGGACTGATGGGTTCTGCTCCAGCTTCATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatataggctttgtttgatggtaaaggtgttgtctttatggaattttgtaacagGGTCTTCTTCTACTGGACTGATGGGTTCTGCTCCAGCTTCATACTCGAATCTTATAAATCAAACAATGCCAAACATGCCTAATTACACTGGTTCTGTTTC
             gtttgat  putative branch site (score: 5)
                                          aattttgtaa  TA-rich tract