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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tactaactcttttacgaagacctgcaactacatgtaaatttgttaaagaaatcaaccattcttgttattttccacttatgaactgtagtgttttaattagTGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCACATTTTTACACCTTGTTTTACATAGCCCATACAACTGGTGCTCCAGTTG

Basic information

species Arabidopsis thaliana
transcript AT3G23640.2
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116479212|gb|EG521804.1|EG521804
EST:     ATTCCGAGGCTGGCACTGATGACCATGAACCATGGTCCTTTGGAGAAGAG                         TGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCA
genomic: ATTCCGAGGCTGGCACTGATGACCATGAACCATGGTCCTTTGGAGAAGAGgtagtttttt ... ttttaattagTGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCA
EST: gi|116389361|gb|EG431953.1|EG431953
EST:     ATTCCGAGGCTGGCACTGATGACCATGAACCATGGTCCTTTGGAGAAGAG                         TGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCA
genomic: ATTCCGAGGCTGGCACTGATGACCATGAACCATGGTCCTTTGGAGAAGAGgtagtttttt ... ttttaattagTGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCA
EST: gi|124734744|gb|EH826146.1|EH826146
EST:     TGACCATGAACCATGGTCCTTTGGAGAAGAG                         TGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCA
genomic: TGACCATGAACCATGGTCCTTTGGAGAAGAGgtagtttttt ... ttttaattagTGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCA
EST: gi|116389362|gb|EG431954.1|EG431954
EST:     ATTCCGAGGCTGGCACTGATGACCATGAACCATGGTCCTTTGGAGAAGAG                         TGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCA
genomic: ATTCCGAGGCTGGCACTGATGACCATGAACCATGGTCCTTTGGAGAAGAGgtagtttttt ... ttttaattagTGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaatcaaccattcttgttattttccacttatgaactgtagtgttttaattagTGTGAGGAAGTCTGTCGTGCCGCATTGAAGAGGCGTTACCAACTCCTACCACATTTTTACACCTTGTTTTACATAGCCCATACAACTGGTGCTCCAGTTG
            attcttgttatttt  TA-rich tract