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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTATTTGAGGTTGCAGTCAAAGGATCGGATGACGAGAAGATATCTGCTGCTACAGTTCTTTGCGGGGCATCTCTCACACGGGGTTGGAACATACAGgttggcattaaatccactaatcagaatctccaccagtgagaattttcggttgaacagacatgtttgatttatctatctttcttcgatgtacag

Basic information

species Arabidopsis thaliana
transcript AT3G23590.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23590.1 (Arabidopsis thaliana), 5'ss of exon 8
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 5'ss of exon 8
GAAACTATTTGAGGTTGCAGTCAAAGGATCGGATGACGAGAAGATATCTGCTGCTACAGTTCTTTGCGGGGCATCTCTCACACGGGGTTGGAACATACAGgttggcattaaat-------ccactaatcagaatctccaccagtgagaattttcggttgaacagacatgtttgatttatctatctttcttcgatgtacag-
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GAAAGTATTTGAGATTGCAGTCAGAGGATCAGATGATGAGAAGATATCTGCTGCTACTATCCTTTGTGGAGCCTCTTTGATTCGGGGCTGGAATATACAGgtatgaggcaaatgtttttacacttgaatggaatttttaaatctttgatacctaattccaccaggcaatattcataaatgcctgtatattt-atttaaatc