Sequence
atgc intronic sequence ATGC exonic sequenceGTCTAGCTAAAACACTTAAAGAAATTAATGGGAGCACTTGGCATGACACTTTCTTGGGGCTTTGGATAGCAGCTCTCCGACTTGTTCAAAGGgttagattactctcttactgatctttctgtttgtgatttcaccactactttggtacccagaaaagtgcaattgctattgcttgcaagttttacttacacc...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G23590.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G23590.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G10970.1 (Glycine max), 5'ss of exon 5
GTCTAGCTAAAACACTTAAAGAAATTAATGGGAGCACTTGGCATGACACTTTCTTGGGGCTTTGGATAGCAGCTCTCCGACTTGTTCAAAGGgttagattactctcttactgatctttctgtttgtgatttcaccactactttggtacccagaaaagtgcaattgctattgcttgcaagtt-ttact-tacacc---------------------------------------------------------------
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GTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACTTTTTTAGGCCTTTGGTTAGCAACTCTTCGTCTTGTTCAGAGGgtatgactctttctctgcaactcaatctgttttcccttgaagttgtggttttaaatttatctt-gtccattgattgcttctagtattccgttaccatacactttgtaattaaggaatttgcataagcagtttactcctccaatttaattgttgatttgtttatag
upper sequence: AT3G23590.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 5'ss of exon 5
GTCTAGCTAAAACACTTAAAGAAATTAATGGGAGCACTTGGCATGACACTTTCTTGGGGCTTTGGATAGCAGCTCTCCGACTTGTTCAAAGGgttagattactctcttactgatctttctgtttgtgatttcaccactactt-tggtacccagaaaagtgcaattgctattgcttgcaagttttacttacacc-
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GTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGGgtcaggactgattaaagctgaaccgatgactt--tatttttccatgaatagtgatacaaatttatgttaaattttcatgatgataaaattatgttgcttcctMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86073701|gb|DR369458.1|DR369458EST: ATGACACTTTCTTGGGGCTTTGGATAGCAGCTCTCCGACTTGTTCAAAGG GAAAGGGATCCTATTGAGGGACCTATTCCTCGACTGGACACAAGGCTGTGC
genomic: ATGACACTTTCTTGGGGCTTTGGATAGCAGCTCTCCGACTTGTTCAAAGGgttagattac ... ttattactagGAAAGGGATCCTATTGAGGGACCTATTCCTCGACTGGACACAAGGCTGTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCTAGCTAAAACACTTAAAGAAATTAATGGGAGCACTTGGCATGACACTTTCTTGGGGCTTTGGATAGCAGCTCTCCGACTTGTTCAAAGGgttagattactctcttactgatctttctgtttgtgatttcaccactactttggtacccagaaaagtgcaattgctattgcttgcaagttttacttacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctcttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccagaaaa