Sequence
atgc intronic sequence ATGC exonic sequenceACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttttaaccatatcttttgaagtcatttgaattctagtaacaaatcaatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G21700.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G21700.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G46120.1 (Glycine max), 5'ss of exon 5
ACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttttaaccatatcttttgaagtcatttgaattctagta-acaaatcaatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacag-
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ACGGCAATCCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATAGCCAATGAGgtaagaattccaata------tttaacatca---aaattgtagtataagtatcatctttctcataacaaaaaaatcgtgctggtgattcgtgattatctctggttcaag
upper sequence: AT3G21700.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA12G10670.1 (Glycine max), 5'ss of exon 5
ACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttttaaccatatcttttgaagtcatttgaattctagtaacaaatcaatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacag
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ACGGCAATTCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCCCTATTGATTTGCAATGGACCATCGCCAATGAGgtaaggattccaa---tatttaacataaaaattacagtttaagtat--gatcttcctcacaacaacaaaaatgcttgttcttagatctagtaaaacagagcctcc--
upper sequence: AT3G21700.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G46250.1 (Glycine max), 5'ss of exon 3
ACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttttaaccatatcttttgaagt--catttgaattctagtaa--caaatcaatacagtgaaattcaatataatttatt-ttacatttggaatgttttgtgtaacag
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ACGACAATTCCAGTGTTGATTGGAACCAAGTTTGATGATTTCATTCAGCTCTGTATTGATTTGCAATGGACCATAGCCAATGAGgtaaggattccaatatttaacatcaaaattgcactttaactatgatcttcctcataacaaaaggggagtgaagtaaaacgtattctttcattaaataaat------------
upper sequence: AT3G21700.3 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv12s0059g02280.t01 (Vitis vinifera), 5'ss of exon 5
ACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttttaaccatatcttttgaagtcatttgaattctagtaacaaatcaatacagtgaaattcaatataatttatt--ttacatttggaatgttttgtgtaacag
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AATGCCATTCCAGTGCTGATTGGAACCAAGTTTGACGATTTCATCCAACTTCCCATTGACCTGCAATGGACAGTTGCAAGTCAGgtaaatttttccacctcaattcataa---ttttaaagttgtgatgaccattgaacctaacgtgggtggttgggagtcggtcattacaaatggtatgacatagg------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86078966|gb|DR374723.1|DR374723EST: ATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAG GCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCT
genomic: ATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttt ... tgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACGGCGATACCAGTTATGGTAGGAACCAAGTTTGATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttttaaccatatcttttgaagtcatttgaattctagtaacaaatcaatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacag
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