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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtttttaaccatatcttttgaagtcatttgaattctagtaacaaatcaatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTGAATAAGATCTTTAAGTTTGTGACGGCGAAGC

Basic information

species Arabidopsis thaliana
transcript AT3G21700.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G21700.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv12s0059g02280.t01 (Vitis vinifera), 3'ss of exon 5
--gtaatgtttttaaccatatcttttgaagtcatttgaattctagtaacaaatcaatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTGAATAAGATCTTTAAGTTTGTGACGGCGAAGC
   |  |    |||       |  |||      ||  ||   ||   ||  ||   || ||| | |   |  |  | |||||  |||| |    ||||||   |  ||||| ||| | || || |||||  |||| || ||||||||||||||||| ||  | ||||||||||||||||| |||||||| || ||  | || || || |
atttgcttgacttaggtgggccccttg---ctcttctaaacatatagacgcattt-taaagtcataaggagaaagagttatt--acatgtaccttgtttt---tggcagGCAAGAGCGTACGCTAAGGCCCTAAATGCAACGCTCTTCTTCTCGAGCGCAACCTACAACATAAACGTGAACAAGATCTTCAAATTCATCACAGCAAAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078966|gb|DR374723.1|DR374723
EST:     ATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAG                         GCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCT
genomic: ATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttt ... tgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTGAATAAGATCTTTAAGTTTGTGACGGCGAAGC
         aaattcaatataattt  TA-rich tract