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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacctttctttgtccttagttttgactttatccgttttccggaaagtcctttctttcctggttctaatgatgagtttctcgttgtatggttcagaagTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTGTTTCATCTCGAG

Basic information

species Arabidopsis thaliana
transcript AT3G20650.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084647|gb|DR380406.1|DR380406
EST:     TTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAG                         A
genomic: TTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAGgtgacctttc ... ggttcagaag-
EST: gi|86084647|gb|DR380406.1|DR380406
EST:     TTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAG                         A
genomic: TTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAGgtgacctttc ... ggttcagaag-
EST: gi|86084647|gb|DR380406.1|DR380406
EST:     TTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAG                         A
genomic: TTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAGgtgacctttc ... ggttcagaag-
EST: gi|86084647|gb|DR380406.1|DR380406
EST:     TTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAG                         A
genomic: TTGGTAATAGTGTTTACTGGATTCGTTTTGGTGAAGAGTATTCCCAAAAGgtgacctttc ... ggttcagaag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagtcctttctttcctggttctaatgatgagtttctcgttgtatggttcagaagTTCAAATCTAGCAGCCCATTTGGTATCGAATACGTGTTTCATCTCGAG
                   ttctaat  putative branch site (score: 2)
       tttcttt  TA-rich tract