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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAAAGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGgtataatgagctaagctcctctagtagtttaggaatcttgttgacatggtataatgagataagttcctctagcttcactatttgtaaatcctaattgtgtaattgcttacag

Basic information

species Arabidopsis thaliana
transcript AT3G20650.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G20650.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G41190.1 (Glycine max), 5'ss of exon 5
TGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAAAGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGgtataatgagctaagctcctctagtagtttaggaatcttgttgacatggtataatgagataagttcctctagcttcactatttgtaaatcctaattgtgtaattgcttacag
  | || || || || ||||| ||||||||||| ||||||||||| || ||||||||||| |  |||||  ||||  |  ||||||| ||||||| ||||||         |    |||| |   | |     ||  ||  | |||   | | ||        |||  | |  |  | | |||    ||    ||     ||||| ||  | 
CAAGGACTGCCGGACACGTTACAACGGTGATGCTGACCATCATCAGCGACGTAAAAAGTTTACATTTCCTGCTCGCCTTATATGTGGAGATTGTTATGAGgtgattaacatttctatcctttgaaaat-----aacatttctaacactctttcatc-------ttctcccaattctattgtttaacgattagcatctgaaaattgttttgaa

upper sequence: AT3G20650.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G22390.1 (Glycine max), 5'ss of exon 5
TGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAAAGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGgtataatgagctaagctcctctagtagtttaggaatcttgttgacatggtataatgagataagttcctctagcttcactatttgtaaatcctaattgtgtaattgcttacag
  |||| ||  | || ||||| ||||||||||| || ||||||||||| ||||||||||| |  |||||  ||||  |  ||||||| ||||||| ||||||     |   | |  ||||     | |     |||  | |  |   ||  | || |  ||  | ||   ||    |  ||||    | | || |  |||  |    | || 
CAAAGACTGCAGAACACGTTACAACGGTGATGCTGATCATCATCAACGACGTAAAAAGTTTACATTTCCTGCTCGCCTTATATGTGGAGATTGTTATGAGgtgattagcatttatgtccttcgaaaat---aaaattctatgcattaggattgataat-tagatcccaaaagt---aagattt----aacttactaatgttttgaagtgca-

upper sequence: AT3G20650.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv19s0014g04740.t01 (Vitis vinifera), 5'ss of exon 5
TGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAAAGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGgtataatgagctaagctcctctagtagtt-tagga-atcttgttgacatggtataatgagataagttcctctagcttcactatttgtaaatcctaattgtgtaattgcttacag
 ||||| || || || || ||||| ||||| |||||||||||||||||||| ||||||||||  |||||| ||||  |  ||||||| ||||||||||||||| | ||   | |   |  |||||  || ||  | || |  ||  |    | || || |||   ||  |          |||  |                            
AGAAGACTGCCGTACACGCTATAATGGTGACGCAGACCATCATCAACGGCGCAAAAAGTTCACATTTCCGGCTCGCCTTATATGTGGAGATTGTTTTGAGgta-attgctgttataacagctagtttttgtaatacatatcatttcccgtatttactg-gatggttttgttctatgctgatatcag----------------------------

upper sequence: AT3G20650.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0023g02860.t01 (Vitis vinifera), 5'ss of exon 3
TGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGGCGTAAAAAGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGgtataatgagctaagctcctctagtagtttaggaatcttgttgacatggtataatgagataagttcctctagcttcactatttgtaaatcctaattgtgtaattgcttacag
     | ||| | || || ||||| |||||   ||||||||||||| |||| ||||||||||  |||||| ||||  |  ||||||| |||| |||||||||    |  | ||   |  | | | || | | |  || | |||| ||  |    ||  |                                                     
-----ACTGTTGTACACGCTATAATGGTGACATAGACCATCATCAAAGGCGCAAAAAGTTCACATTTCCGGCTCGCCTTATATGTGGAGATTATTTTGAGgttcgcttggatagagt--tttggaagatgatgc-tccttttgatattttcagttgccag----------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084647|gb|DR380406.1|DR380406
EST:     GTAAAAAGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAG                         GTAGAGCTAGACAAGATTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGT
genomic: GTAAAAAGTTCAGTTTTCCGTCTCGATTATTATGTGGGGATTGTTTTGAGgtataatgag ... ttgcttacagGTAGAGCTAGACAAGATTCTTGAAGAGGATGCCCCTTTTGATATCTGCAGT