Sequence
atgc intronic sequence ATGC exonic sequenceGGTGGTGATTTGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGTCGgtaagtttactggctgaatgatagctgtatctttattttgcatatatgttttatctctatacctgagaagtgcttctatgttgtacttaataacag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G20650.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G20650.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA06G41190.1 (Glycine max), 5'ss of exon 4
GGTGGTGATTTGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGTCGgtaagt-ttactggctga-atgat-agctgtatc--tttattttgcatatatgt-tttatctctatacctgagaagtgcttctatgttgtacttaataacag
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GGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCGgtaagtattacgtgctgccataattggctgcaccggttttccttatctgtttgtgtccataatcaattccatcaattcatactaagatgcagttgactaa--
upper sequence: AT3G20650.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA08G22390.1 (Glycine max), 5'ss of exon 4
GGTGGTGATTTGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGTCGgtaagt-ttac----tggc-tgaatgatagctgtatctttattttgcatatatgttttatctctatacctgagaagtgcttctatgttgtacttaataacag
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GGTGGTGATCTTATCAAATGGGACAAGGCCAAAATTGGATATTATGTTGGTATTGACATTGCTGAAGGCTCAgtaagtattacatcttgtcataattgtctgcactggttttccttttctgatcatttccttagtcacttccatcaaatcatactaagatgcagttgaatct--
upper sequence: AT3G20650.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv19s0014g04740.t01 (Vitis vinifera), 5'ss of exon 4
GGTGGTGATTTGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGTCGgtaagtttactggctgaatgatagctgtatctttattttgcatatatgttttatctctatacctgagaagtgct--tctatgt-tgtacttaataacag--
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GGTGGTGATCTAATCAAATGGGACAAGGCAAAGATTGGATACTATGTTGGCATCGATATTGCTGAAGGCTCGgtaaact-gctaatatacttctttctgtttcttgaaactctctttctgttggactttgacgtggatgaaattataattaatgcatgaactggaggccattt
upper sequence: AT3G20650.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S49_100V6.1 (Physcomitrella patens), 5'ss of exon 5
GGTGGTGATTTGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGTCGgtaa--gtttactggctgaatgatagctgtatctttattttgcatatatgttttatctctatacctgagaagtgcttctatgttgtacttaataacag--
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GGGGGAGATCTGATCAAGTGGGACAAGGCGTCAATTGGTTACTACGTTGGTATTGACATTGCCGAAGGCTCGgtactcatcttttaagcccacaatgaaataatgctttttgctgatttcaatatgaacgagtccgcaacgcatggactcgatgcttgggttaattttgttgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86084647|gb|DR380406.1|DR380406EST: GTACTATGTTGGAATTGATATTGCTGAAGGGTCG ATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGG
genomic: GTACTATGTTGGAATTGATATTGCTGAAGGGTCGgtaagtttac ... ttaataacagATTGAAGATTGTCGCACGCGTTATAACGGTGATGCAGACCATCATCAACGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGTGGTGATTTGATCAAGTGGGATAAGGCGAGAATCGGGTACTATGTTGGAATTGATATTGCTGAAGGGTCGgtaagtttactggctgaatgatagctgtatctttattttgcatatatgttttatctctatacctgagaagtgcttctatgttgtacttaataacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG