1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...attctatggttttaattgtttaaagtctgtttctttaagcaatcgtttcgccaaaatgactatgattgtgtaaagcttaaagtcagattctgtctttcagGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATTTTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCGAGA
species | Arabidopsis thaliana |
transcript | AT3G20650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGCTCTGCTCCTCCTCCTTCTTCCAGATTCAAATCTAATCCCGAAG GTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATTTTGCCCGGAAAGEST: gi|116457292|gb|EG499884.1|EG499884
genomic: TTCAAGCTCTGCTCCTCCTCCTTCTTCCAGATTCAAATCTAATCCCGAAGgtttcgtttc ... tgtctttcagGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATTTTGCCCGGAAAG
EST: TTCAAGCTCTGCTCCTCCTCCTTCTTCCAGATTCAAATCTAATCCCGAAG GTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATTTTGCCCGGAAAG
genomic: TTCAAGCTCTGCTCCTCCTCCTTCTTCCAGATTCAAATCTAATCCCGAAGgtttcgtttc ... tgtctttcagGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATTTTGCCCGGAAAG
tttcgccaaaatgactatgattgtgtaaagcttaaagtcagattctgtctttcagGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATTTTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCGAGA
ttctgtctttc CT-rich tract
aaaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attctatggttttaattgtttaaagtctgtttctttaagcaatcgtttcgccaaaatgactatgattgtgtaaagcttaaagtcagattctgtctttcagGTGATTCTCAGTTTCTGGAAGATGAGACTACAAAGAATTTTGCCCGGAAAGTTGCTGATCATTACAGTAGGAGAACAAACCAAACATTGGAAGAGCGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - -ggtttta
- - - - - - - - - - - - - ctgtttc
- - - - - - - - - - - - - - - - - -taagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - ccaaaat