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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTCTTCAGTGATGTGGGTGGAGCAACTCTGGACTCTCACCATGGTTTTGTTGTTGAATATGGGAAAGATAGGGATGTTGATTTAGgtgagaccctttgacatatcctgtataatttcccatgacctgactagttgtcctaaatgcagatatattccaatactcacgttattctggctgaaaattatcagatgttatataaattttcag

Basic information

species Arabidopsis thaliana
transcript AT3G18210.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18210.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g31770.2 (Oryza sativa), 5'ss of exon 5
TATTCTTCAGTGATGTGGGTGGAGCAACTCTGGACTCTCACCATGGTTTTGTTGTTGAATATGGGAAAGATAGGGATGTTGATTTAGgtgagaccctttgacatatcctgtataatttcccatgacctgactagttgtcctaaatgcagatatattccaatactcacgttattctggctgaaaattatcagatgttatataaattttcag
|||| |    ||| || ||||||| |||  | ||  | ||||||| |||||||||||| ||||||||||| |||||||||||  | ||| ||   |  | | | ||     ||| | |   || || | |     |||   |||  || ||  | |  || | |       |  ||  |||  ||      ||                 
TATTATATCCTGAGGTTGGTGGAGGAACATTAGATACACACCATGCTTTTGTTGTTGAGTATGGGAAAGACAGGGATGTTGAACTCGgtaagttaccattataaatttataatattgttttat-acttaatagcctgt---aaaatcatatgaagtaaaagaattgt----tcttgattgatcatgtctgcattc---------------

upper sequence: AT3G18210.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G027311_T01 (Zea mays), 5'ss of exon 5
TATTCTTCAGTGATGTGGGTGGAGCAACTCTGGACTCTCACCATGGTTTTGTTGTTGAATATGGGAAAGATAGGGATGTTGATTTAGgtgagaccctttgacatatcctgtataatttcccatgacctgactagttgtcctaaatgcagatatattccaatactcacgttattc-tggctgaaaattatcagatgttatataaattttcag
|  | |    ||| || ||||||| |||  ||||||| || || | |||| ||||||||||||||||||| |||||||||||  ||||| ||  |||     |||| |   |  | | |  || || ||           ||  |  | | |  ||  | |   || |  |||| |      || || ||   || | | ||         
TTCTTTATCCTGAGGTTGGTGGAGGAACATTGGACTCCCATCACGCTTTTATTGTTGAATATGGGAAAGACAGGGATGTTGAACTAGgtaagttcctgcactatattc---aagaatgcagataacttg-----------tagttagaaacaccttgaagtgtccaaggaattcattatcataagttttcttttgcttt-ta---------

upper sequence: AT3G18210.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G11180.1 (Glycine max), 5'ss of exon 5
TATTCTTCAGTGATGTGGGTGGAGCAACTCTGGACTCTCACCATGGTTTTGTTGTTGAATATGGGAAAGATAGGGATGTTGATTTAGgtgagaccctttgacatatcc-tgtataatttcccatgacct-gactagttgtcctaaat---gcagatatattccaatactcacgttattctggctgaaaattatcagatgttatataaattttcag
| |||||    || || || ||  |||| ||||| ||||| |||||||||||||| |||||||| |||||||| |||||||| ||||||  |||  | ||    |||  | | |  |||  | |  | | |   |  ||    | ||   | |  |  |     ||  |    ||||| |  ||                               
TCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGGTTTTGTTGTAGAATATGGTAAAGATAGAGATGTTGACTTAGgtacgact-tctgctggatctgtatttgttttatcgttccataggtcatgtgcataatatttagtaagtgaacctacatcatggtattattataactatgg---------------------------

upper sequence: AT3G18210.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G31060.1 (Glycine max), 5'ss of exon 5
TATTCTTCAGTGATGTGGGTGGAGCAACTCTGGACTCTCACCATGGTTTTGTTGTTGAATATGGGAAAGATAGGGATGTTGATTTAGgtgagaccctttgacatatcc-tgtataatttcccatgacct-gactagttgtcctaaat---gcagatatattccaatactcacgttattctggctgaaaattatcagatgttatataaattttcag
| |||||    || || || ||  |||| ||||| ||||| |||||||||||||| |||||||| |||||||| |||||||| || |||  |||  | ||    |||  | | |  |||  |||  | | |   |  ||    | ||   | |  |  |     ||  |    ||||| |  ||                               
TCTTCTTTGCAGAAGTTGGCGGGTCAACCCTGGATTCTCATCATGGTTTTGTTGTAGAATATGGTAAAGATAGAGATGTTGACTTGGgtatgact-tctgctggatctgtatttgttttatcattccataggtcatgtgcataatatttagtaagtgaacctacatcatggtattattataactatgg---------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164099519|gb|ES117980.1|ES117980
EST:     TGGGAATGATAGGGATGTTGATTTAG                         GCTTTCATGTGGATGATTCAGAAGTAACGCTGAATGTTTGTTTGGGTAATC
genomic: TGGGAAAGATAGGGATGTTGATTTAGgtgagaccct ... aaattttcagGCTTTCATGTGGATGATTCAGAAGTAACGCTGAATGTTTGTTTGGGTAATC