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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgtgcatccattttttgtttttctcttatccttcgtattttgttcatttgctcttgtttgaccatgcagATAGACAATTTTGAAAGGTGGGTGGGTGAGACCAAATTCCGGATAATGAGACCAAACACCATGAATAAATACGGTGCTGTGCTTGACGACTTTGGTCTAG

Basic information

species Arabidopsis thaliana
transcript AT3G18210.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124721751|gb|EH813153.1|EH813153
EST:     CCTAGCTTTTGTGAGATGATGCTAGCCGAG                         ATAGACAATTTTGAAAGGTGGGTGGGTGAGACCAAATTCCGGATAATGAGA
genomic: CCTAGCTTTTGTGAGATGATGCTAGCCGAGgtaatgtgca ... gaccatgcagATAGACAATTTTGAAAGGTGGGTGGGTGAGACCAAATTCCGGATAATGAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttttctcttatccttcgtattttgttcatttgctcttgtttgaccatgcagATAGACAATTTTGAAAGGTGGGTGGGTGAGACCAAATTCCGGATAATGAGACCAAACACCATGAATAAATACGGTGCTGTGCTTGACGACTTTGGTCTAG
                                         gtttgac  putative branch site (score: 4)
                     tattttgttcattt  TA-rich tract