Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagataaatatatgttttcttctgagttttgttaactctctctgatgattgcttagttgtctgattatgaattaatctaattttattcagGCACATTCAGAATGGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGAGGAACGTTATGGCAACCCAACTATGATTCTCTCCGAAA

Basic information

species Arabidopsis thaliana
transcript AT3G18070.1
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18070.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA09G30910.1 (Glycine max), 3'ss of exon 9
gtgagataaatatatgttttctt-ctgagttttgttaactctctctgatgattgcttagttgtctgattatgaatt---aatctaattttattcagGCACATTCAGAATGGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGAGGAACGTTATGGCAACCCAACTATGATTCTCTCCGAAA
      ||| | ||   ||  |  | ||  ||  |||  | |   |     |     |    |    | |  ||||   ||  | | ||| | |||||  ||||  | ||| | |||||||| |||||||| ||||||||| | || ||||||||  ||||||||||||| ||||||||| | ||  | || ||||
-----gtaagtttaaacttagtcacagatattcattatatatagatacaagtgcaacaaccatgcattgactaatttgtaagttcaatttttacagGCTAATTCTTATTGGCTTTACAATGTACCATGGGGCATGTACAAATCATTGATGTACATAAAGGAACGTTATGGAAACCCAACTGTTATCTTATCTGAAA

upper sequence: AT3G18070.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA07G11310.1 (Glycine max), 3'ss of exon 9
gtgagata-aatatatgttttcttctgagttttgttaactctctctgatgattgcttagttgtctgattatgaattaatctaattttattcagGCACATTCAGAATGGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGAGGAACGTTATGGCAACCCAACTATGATTCTCTCCGAAA
|| || |  ||  ||        | |   ||||    |  |      |  |    |   ||| || ||| |    |||  | | ||| | |||||  ||||  | ||| | ||||| || |||||||| ||||||||| | || ||||||||  ||||||||||||| ||||||||| || |  | |||||||
gtaagttttaacttagtgacagatattcattttaaagatacaagtgcaccaaccatgcattgactaatttt----taagttgaatttttacagGCTTATTCTTATTGGCTTTACAACGTACCATGGGGCATGTACAAATCATTGATGTACATAAAGGAACGTTATGGAAACCCAACTGTGTTCTTATCCGAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctctgatgattgcttagttgtctgattatgaattaatctaattttattcagGCACATTCAGAATGGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGAGGAACGTTATGGCAACCCAACTATGATTCTCTCCGAAA
                                       atctaat  putative branch site (score: 3)
                                             ttttattc  CT-rich tract
                        tctgattatgaattaa  TA-rich tract