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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTCAGAATGGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGAGGAACGTTATGGCAACCCAACTATGATTCTCTCCGAAAACGgtattcaatataaatttttgttccacatccaagatctctagagatgttaagtgtataatctttatag

Basic information

species Arabidopsis thaliana
transcript AT3G18070.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G18070.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA09G30910.1 (Glycine max), 5'ss of exon 10
CATTCAGAATGGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGAGGAACGTTATGGCAACCCAACTATGATTCTCTCCGAAAACGgta---ttcaatataaattt-ttgttccacatccaagatctctagagatgttaagtgtataatctttatag-----------------------------
 ||||  | ||| | |||||||| |||||||| ||||||||| | || ||||||||  ||||||||||||| ||||||||| | ||  | || ||||| ||||   ||  |||| ||||| ||| |            |  || |      | |||||    |  ||  |                              
AATTCTTATTGGCTTTACAATGTACCATGGGGCATGTACAAATCATTGATGTACATAAAGGAACGTTATGGAAACCCAACTGTTATCTTATCTGAAAATGgtaacgttatatatcaatttcttgctttgttctttttttggcttggtgacattagtgttctgttgtttcaatgtcatgtgacatattttatggcatgtag

upper sequence: AT3G18070.1 (Arabidopsis thaliana), 5'ss of exon 10
lower sequence: GLYMA07G11310.1 (Glycine max), 5'ss of exon 10
CATTCAGAATGGTTATACAATGTCCCATGGGGAATGTACAAAGCTTTAATGTACATTGAGGAACGTTATGGCAACCCAACTATGATTCTCTCCGAAAACGgtattcaatataaatttttgttccacatccaagatctctagagatgttaagtgtataatctttatag--------------------------
 ||||  | ||| | ||||| || |||||||| ||||||||| | || ||||||||  ||||||||||||| ||||||||| || |  | |||||||| ||||  || |||| ||   | |    | |      | | | |   || | | | | |  | |  ||                            
TATTCTTATTGGCTTTACAACGTACCATGGGGCATGTACAAATCATTGATGTACATAAAGGAACGTTATGGAAACCCAACTGTGTTCTTATCCGAAAATGgtaa-cattatatatcaatttcttgctttttcctttttttggcttggtgattctgttgtttcaatgtcatgtgacatattttatgacatgtag